barSeed - Barley Seed Development Database

Probe CUST_492_PI415269222

Source Contig BE420825

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_492_PI415269222	Hv_44K_v2	GCGTGGCGCTTTCATGGCTTTTCTTCTTCTTCTTCTTTAATTTATTGTGTACAGTACATG	397	GeneList: lightsteelblue1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	14.016	4.166	1.253	0.804	0.402	0.531
Raw	2121.573	1054.672	271.073	289.423	45.635	70.103

Probe Sequence's BLAST hits in Barley Unigene Datasets

This probe has no hits to the blast databases

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence

Contig Sequence (500 bp)

>BE420825 500 Hv_44K_v2
GGCCAGCCTCGCGGCTCGAGTATTCTGCACGAGCCGCAACGGCTTCGCCGTCATCGCCTC
CGACGCCGCGCTCTACAACGACACGAGCACCGTGGACGTGGTGGACTCTTACTCGGGCCT
CCTCAGCACCATCTTCGGGCCCTACTTCCGGCAGGACTTCGCGGACTCCATGGTGAAGAT
GGGCAGCATCGGCGTGCTCACCGGCGCCAACGGGGAGGTCAGGAAGGTCTGCTCCAAGTT
CAACTGAGGCCCATCACCATCACCCATCCCCGGATCCATATTCCATTCATTGCGCTGCCG
GCCGGCCGGAGGACTGGTTGGCAAGCTGGAGATGAGATGAAAAGCACTAGCCAGCCCATG
CATTCGGACATGCATCTCGTGGATGCATGGCCCCGTCGCGTGGCGCTTTCATGGCTTTTC
TTCTTCTTCTTCTTTAATTTATTGTGTACAGTACATGTTATTGAAAAGAGAGAGAAGGGG
AAATTTAGTGGGTTCATGTG

Homology of Contig BE420825 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None