- Probe CUST_4927_PI390587928
- Source Contig U35_33328
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_4927_PI390587928 | Hv_44K_v2 | GATTCTGTATTACAATTTGGTGGAGGAACTTTAGGATATCCTTGGGGGAATGCACCTGGT | 504 | GeneList: greenyellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 6.511 | 4.352 | 1.110 | 0.955 | 0.702 | 0.764 |
| Raw | 65127.167 | 64661.667 | 15237.000 | 20426.903 | 5187.570 | 6340.077 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC04254 | 1408 | 1e-23 | 582 - 641 | 98 | 59 / 60 | minus | |
| Harvest35 | U35_33328 | 592 | 3e-25 | 505 - 564 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_33264 | 640 | 1e-23 | 504 - 563 | 98 | 59 / 60 | minus | |
| Harvest35 | U35_33243 | 633 | 1e-23 | 508 - 567 | 98 | 59 / 60 | minus | |
| Harvest35 | U35_33229 | 795 | 1e-23 | 419 - 478 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_33160 | 787 | 1e-23 | 78 - 137 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_136 | 1785 | 1e-23 | 1488 - 1547 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_33140 | 748 | 5e-23 | 137 - 195 | 98 | 58 / 59 | plus | |
| Harvest35 | U35_35 | 1117 | 6e-22 | 952 - 1011 | 97 | 58 / 60 | plus |
Contig Sequence (592 bp)
>U35_33328 592 Hv_44K_v2 TGCGGCAAGCGAGCAGCATGATGACGTGTCGCCGCCTTGTGAGCTTCGATTGGCAGCTGA TGACGTGTTAGGAGGGTCCAAACACTTCATATTTGCAAACTGGGCAGGTCTTGTCGATCT TGAGCCACTTGGTGATGCAAGTTGCATGGTAATTATGTTTGCAGGGCAAGGTTATGATGT TCTCCCTGTTTTTGAAAGCTGACAGACACACAGTGCAAGTCTCATCATTGTTTGTCTTCT TTGAAAAGAACCCTGATCCTGACTTGTACTTCCATGGCACCAAATATGACATGAGCTCAT CAGACAAACCTCTGCTAGCGGCCGCTCGATAGTATCTACCGGCTCGAACTCGAATTTGAT CGCCTTCCATACTTCACAAGCTGCGGCTAGTTCAGGACTCCATTTGCAAGCTGCTCGGAT AATTTCATTACCTTCGCGAGCAAGATCACGCCCTTCGTTACGAGCTTGTACACAAGCTTC TAAAGCCACTCGATTAGCTGCTGCACCAGGTGCATTCCCCCAAGGATATCCTAAAGTTCC TCCACCAAATTGTAATACAGAATCGTCCCCAAAGATTTCGGTCAGAGCTGGC
Homology of Contig U35_33328 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os10g21268.1 | 485 | 1e-51 | protein|ribulose bisphosphate carboxylase large chain precursor, putative, expressed |
| Brachypodium v1_2 | Bradi3g27325.1 | 459 | 3e-54 | |
| Arabidopsis v10 | None |