barSeed - Barley Seed Development Database

Probe CUST_4925_PI390587928

Source Contig U35_33329

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4925_PI390587928	Hv_44K_v2	AGCTTGGGGTATCTATTCTTGGTCGGCGCTTTGGTGATTCCATGGAAAATGTTCCAATAA	0	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251343.1	5287	2e-24	1137 - 1196	100	60 / 60	plus	ABC11842
MLOC	MLOC_6138.2	5370	2e-24	4081 - 4140	100	60 / 60	minus	ABC11842
MLOC	MLOC_6138.3	5061	2e-24	4081 - 4140	100	60 / 60	minus	ABC11842
MLOC	MLOC_6138.1	5179	2e-24	4115 - 4174	100	60 / 60	minus	ABC11842
MLOC	MLOC_6138.4	3844	2e-24	2548 - 2607	100	60 / 60	minus	ABC11842
MLOC	MLOC_6138.5	3535	2e-24	2548 - 2607	100	60 / 60	minus	ABC11842
MLOC	MLOC_6138.6	3999	6e-24	2237 - 2295	100	59 / 59	minus	None
JLOC1	JLOC1_3982.3	5925	8e-25	1816 - 1875	100	60 / 60	plus
JLOC1	JLOC1_3982.2	5151	8e-25	1042 - 1101	100	60 / 60	plus
JLOC1	JLOC1_3982.1	5281	8e-25	1172 - 1231	100	60 / 60	plus
Harvest35	U35_33329	276	3e-25	1 - 60	100	60 / 60	minus

Contig Sequence (276 bp)

>U35_33329 276 Hv_44K_v2
TTATTGGAACATTTTCCATGGAATCACCAAAGCGCCGACCAAGAATAGATACCCCAAGCT
TCTCAGATTCAGAGGCTGAAGCCTCTTCTTCTGCCACTTCTAGACTCGTGGCATTGCCAC
ATGCATAGAAAGATCTAATTTCATCCTTCAATCTGTCTCCTCCAGAAAAGGTCCTTGCTC
TCCTTGCAGCTCTTTGCCTTCTGTTTACAGTCTTCCATCTAACCTCAGGATCTATAGGTC
TGGGGACCTCCAGGCCGCTGGTGTTAAGCTTGCTGC

Homology of Contig U35_33329 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None