barSeed - Barley Seed Development Database

Probe CUST_491_PI415269222

Source Contig TA38624_4513

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_491_PI415269222	Hv_44K_v2	TCAGTTTCGGAATAATATGTTTATTTTGTACCAGTGGCACCTCAGATAGTTGCAATAACC	1193	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_80687.1	2213	2e-24	41 - 100	100	60 / 60	minus	ABC11836 ABC51485
JLOC1	JLOC1_53727.2	2120	8e-25	1969 - 2028	100	60 / 60	plus
JLOC1	JLOC1_53727.1	2187	8e-25	2036 - 2095	100	60 / 60	plus
Harvest21	ABC11836	1092	3e-25	1016 - 1075	100	60 / 60	plus	ABC11836

Contig Sequence (1253 bp)

>TA38624_4513 1253 Hv_44K_v2
GCACGAGGGAGATGTTAGTTTGTCAGAATCACCTGATTGTCAGAAGTGCATGCGGCTTAT
ACTGAGTCTTTGCTTATCTGAGGGATTCGATACTTTCCCAACTCTGCTCTGCACTGATGG
TTGCTCAATGATTGATCGTCGGATGGGTATATATGGTTATCCTATTGAGATCCAAGCTCT
CTTCTACATGGCATTAAGATGTGCTCTCCAAATGCTCAAGCCGGATGGTGAAGGGAAAGA
CTTCATAGAGAAGATAGGGCAGCGACTACATGCATTAACCTATCACATGCGAAATTACTT
CTGGCTTGATTTCCCACATCTAAATAACATATATAGATACAAAACAGAAGAGTACTCCCA
CACTGCTGTGAACAAATTCAATGTCATCCCGGATTCAATTCCTGATTGGGTGTTTGATTT
CATGCCATGCAAGGGAGGCTACTTTCTTGGCAATGTCAGCCCTGCTATGATGGACTTCAG
GTGGTTTGCTCTTGGAAACTGTATTGCCATTATATCATCTCTAGCTACTCCGGAGCAGTC
ATCGGCAATAATGGACCTGATCGAGGAGAGGTGGGATGAGCTAGTGGGCGAGGTGCCTCT
GAAGATAGTATATCCTGCACTTGAGAACCATGAATGGAGAATAATTACTGGCTGCGACCC
CAAGAATACCCGGTGGAGTTATCATAATGGAGGATCATGGCCAGTTCTTCTATGGCTGCT
GACAGCAGCCTGCATCAAGACCGGGCGGCCACAAATGGCGAAGCGCGCCATCGAGCTCTC
CGAGGCAAGACTCCTCAAGGACGGCTGGCCCGAGTACTACGATGGCAAGCTGGGAAAGTT
CGTCGGCAAGCAGGCCAGGAAGTTCCAGACATGGTCCATTGCTGGCTACCTCGTCGCGCG
GATGATGCTGGAGGACCCTTCAACGCTCCTGATGATCACAATGGAGGAGGACCGGCCGGT
GAAGCCGACAATGAGGCGGTCGGCGTCATGGAATGCCTGAAGAAAGGTTGGGTGGTTGTT
CCTCCAAAAAAGAATTTACTTGCCAAGGGTTGAACAGAAAAAAGCGTCCGGAGTTGGTTG
TAATTGTACTCTGTCAGTTTCGACAGAAGTGTATACCGTAGATGCAACTAGAAGTCGCAC
TACATTTTCCTTTTGTCGAAAACAGCAAGTCAAGCTTGTGCTTTGGTGATACCTCAGTTT
CGGAATAATATGTTTATTTTGTACCAGTGGCACCTCAGATAGTTGCAATAACC

Homology of Contig TA38624_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os11g07440.3	549	protein\|plant neutral invertase domain containing protein, expressed
Brachypodium v1_2	Bradi4g24470.1	553
Arabidopsis v10	AT1G22650.1	534	Plant neutral invertase family protein \| chr1:8013529-8015647 REVERSE LENGTH=534