barSeed - Barley Seed Development Database

Probe CUST_4913_PI390587928

Source Contig U35_21351

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4913_PI390587928	Hv_44K_v2	GATGTAACTGTACAGTGTTTAAAACATTTGCTGGCTTGTAGCCTTGTATGACTGTATATT	1064	GeneList: orangered4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.719	4.291	1.294	0.719	0.724	0.454
Raw	49.967	96.032	23.580	19.895	6.441	3.289

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65910.2	1490	2e-24	32 - 91	100	60 / 60	minus	ABC05150 ABC41342
MLOC	MLOC_65910.1	1567	2e-24	234 - 293	100	60 / 60	minus	ABC05150 ABC41342
JLOC1	JLOC1_43400.1	1428	8e-25	1177 - 1236	100	60 / 60	plus
Harvest21	ABC41342	609	3e-25	39 - 98	100	60 / 60	minus	ABC41342
Harvest35	U35_21351	1162	3e-25	1065 - 1124	100	60 / 60	plus

Contig Sequence (1162 bp)

>U35_21351 1162 Hv_44K_v2
TCTCCTCTCCTCCCTCCCTCCCTCCCACCCAGCTGCTATCCTTTGTGCTTGAGTCTCTTT
GTGCTTAGCTACGTTACACGCACCAACTCCACCACCAAGAACTGGGTCCGCCACTCCACC
GGGTCCTATCCGCCGGCGCTGTGCTCCGATGAGCAGCTCCGACCCGATCGACCACATGTC
GGTGAGCGAACGTCTGCAGCGGCTGGCGACGCCGTCGGCCCCGGCGGAGGACGACGTGGA
CGTGGACGGCGATGGCGACGGTGCGACTTTCCGGGACATCCACCCGTCCCCGGCGCCGGC
GCCGCTGCGGCAGCCCTCCTGGGACGTGGCGAGCCAGCGCTCGCTGTCGTCCTACTCCGA
CGAGCAGTTCATGGCCAGCATGGGCCGCGAGTTCAACGCCATGGTGGACGCGGGGGGCGG
ACCGCCAACCGACCCTTGCCCCGGTCCCGGGGACTCCGGCGCCGCGAACAACGACCTGCA
GCTGGCGCGGATCGGGGAGCACGAGCCCGTGCCGGAGACGAACCCGCTGGCCATCGTGGC
GGACGCCGGGCGCCCGCTGCCGCTGCCAGCGGGGCCGTCGTCGTCGTGCGCCCCGGCGGC
GGAGGTGGTGGAGGTGCGGCAGGTGAAGAAGGACGAGGCGGAGGCGAAGGTGGCGGCGTG
GCAGGCGGAGGAGGTGGCCAAGATCAACAACAAGTTCAAGCGGGAGGAGGTGGTCATCAA
CGGGTGGGAGAACCAGCAGATCCACACGGCCACCACTTACTTGAGCAAGATCGAGAGGAA
GCTGGAGGAGGAGCGCGCCAAGGCGACGGAGAAGGCGCAGAACGAGGTGGCGCGGGCGCG
GCGGAAGGCGGAGGAGAAGCGGGCGTCGGCGGAGGCGGCGCGCGGGACCAAGACGGCCAG
GGTCATGGAGCTCGCCAACTTCATGAAGGCCGTCGGCAGGGTGCCCACCAAGCGCTCCTT
CTTCTCTTTCTCCTCCTCCTCCTAAGACATGACACGGCCGCTTTCTTCACCAACCATCAA
TTTCCTGTTTTTGATCGACTTCGATCTGTATTATTGAATCCAGGGATGTAACTGTACAGT
GTTTAAAACATTTGCTGGCTTGTAGCCTTGTATGACTGTATATTATTAAAAACATTTTAA
GGCTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_21351 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g54240.1	265	3e-80
Arabidopsis v10	None