barSeed - Barley Seed Development Database

Probe CUST_4912_PI390587928

Source Contig U35_21352

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4912_PI390587928	Hv_44K_v2	ATCAATAGTCGGTGCTTCTTGAGATGTTGATGGCCATTCATGGCATGTAGCGTGTTTATG	964	GeneList: paleturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.720	1.878	1.448	0.676	0.272	0.236
Raw	180.011	95.267	66.259	50.740	6.431	6.044

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74354.1	2256	2e-24	2137 - 2196	100	60 / 60	plus	ABC14397
JLOC1	JLOC1_49551.1	2219	8e-25	2108 - 2167	100	60 / 60	plus
Harvest21	ABC14397	1074	3e-25	965 - 1024	100	60 / 60	plus	ABC14397
Harvest35	U35_21352	1074	3e-25	965 - 1024	100	60 / 60	plus

Contig Sequence (1074 bp)

>U35_21352 1074 Hv_44K_v2
GCGCCTCGCTGGCGTCGACGATGCGCGACCGCTTCCCGGAGCTCAACATGACGAGCGCCG
ACTGCCAGCCCATGACCTGGCTGCAGTCCGCGGCGCTGTCCTTCTTCAGCTTCACCAACA
GCAAGCCGGTGGAGGACGTGCTCCTGCCGAGGCCGGCCAGCCCGAGCACCTTCAGCAAGG
GCAAGTCGGACTACGTCCGGCGCGCCATCCCCAAGGCGGTGTGGAAGGAGGTCTACGCCA
GCTGGTTCACGATGAAGGGCGCCGGGGTGATCGTGCTGGAGCCCCACGGCGGGTTCATGT
GCGGCGTGCCCGATGACGCCACCCCGTACCCGCACCGGAGGGGGGTGCTGTACGTGATCC
AGTACATCGCGTTCTGGATGAGCGCCGACGGCGGGCCGGCGGCGACGAGCTGGCTGGACG
GTTTCTACGGGTTCATGGCGCACCACGTGACCAAGCACCCGAGGGAGGCGTGGGGTGACT
TCCGGGACCTGGACATCGGGCAGAACGCGCTGGAGGACGACTTCGGGGTCGGCGCCGCCG
AGAACGCCAGGTTCTGGGGCCAGCGCTACTTCCTCAACAACTACGAGAAGCTCGCCAAGG
TGAAGGCCGCCGTCGATCCCACCAACTACTTCAGGAACGAGCAGAGCATCCCGCCCATGG
CCGCACAGCCACGCGAGTGAGCACCGAGCGGACCAGGGTTGCACGCCAAGGCAAGGCATC
CATCGGATCAACCAACAAACTACTAAATCATTCATGGTCGACGATGGCTTGCTTTGCTGC
ATAAACAATACTGCTGTCGGTTGTATTGGATTGGATCCTTCGTGACGACGACTGGTTAAG
TCGGTTTACTTTCCTGGTTAAGATGTGTCGGTTGTGGGTTTTTTCTTTCCTTGTGTTCTG
ATGTCTAGTTGTGTTACTTTCCCAGTAGTACTACTACAGTGGAGACAGTGTACTTTCCTG
GAAAATCAATAGTCGGTGCTTCTTGAGATGTTGATGGCCATTCATGGCATGTAGCGTGTT
TATGTTATTGTTTATTAATTGCACTGGCAGCACTGCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_21352 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g35630.1	529	1e-75	protein\|reticuline oxidase-like protein precursor, putative, expressed
Brachypodium v1_2	Bradi3g35230.1	369	4e-76
Arabidopsis v10	None