barSeed - Barley Seed Development Database

Probe CUST_4911_PI390587928

Source Contig U35_21353

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4911_PI390587928	Hv_44K_v2	GTACCTCCGCTTGAAACAGGCTCTAATCACCTATTGTGCTTATATTTGAAGTTCTGTAAA	874	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.185	1.414	1.355	0.941	0.530	0.393
Raw	2034.817	3823.517	3186.813	3400.043	689.640	557.449

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371808	1419	2e-23	1354 - 1411	100	58 / 58	plus	ABC17053
MLOC	MLOC_53459.1	4851	2e-23	3915 - 3972	100	58 / 58	plus	ABC17053
MLOC	MLOC_53459.2	1142	2e-23	956 - 1013	100	58 / 58	plus	ABC17053
JLOC1	JLOC1_34349.1	1656	1e-23	940 - 997	100	58 / 58	plus
Harvest35	U35_21353	948	3e-25	875 - 934	100	60 / 60	plus

Contig Sequence (948 bp)

>U35_21353 948 Hv_44K_v2
CTTCATCGTCTGGCTCCTCCTCCGCCCGCGCGCGCCCGCCTTCTCCCTCTCTTCACTCAC
CCTCTCCCGCGTCGCCTATTCCCCGGCCAACTCCTCCCTCTCCGCGGCCTTCGACGCCTC
CCTCCTCGCCGACAACCCCAACTCCAAGCTCACCATCTCCTACTCCTCCCTCGTCGCCTA
CGTCGACCTCGCCCCCTCCTCCCCCATCGCCGTCACTTCCCTCGCGCCCTTCGCGCAGGG
GCCCCGGAACGCAACCACGCTCGCCTTCCGCCTCGACGTCGACGGGACCTACGTCGGGCC
CGACGAGGCCGCCGCGCTCAAGAGCGGGAACGGGGGCACCATGGAGGTCCAGGTGAGGCT
CGCGGCCATCGCCGTGTTTGATAGAGGGGGCTGGCGCACCCGCCGGAGGGCCATGAGGGT
GCTGTGCGATGGAGTGCCCGTCACATTCCGTGGCAAGAACGCCACCGACGCGAAATTTGA
TGGCCCGGCACGCCGCTGCCAAGTCGTCTTGTGAAGGATTGTTCACGCCTGTCAACTACT
CCAGATGATGATCTGAGGGGCCACCTTCAATAGGTACGAGAAGGTAGCTGATCTTATAAG
AAGTTGGCCAGCCACTGATTCATGAGTGATAGCTGGGTAACTTACCTGCCTGCCAATAGA
ATCCATGACCAGGAAGAGTCTGAAATGATGCTTAATTGATAGTATGTGACTTTTTCACCC
GTCATATCATAGCTTCAAGATGGGTGTACATTGAATATACCGAGTGTGCATGTGGGAAAT
GCTTGGCAAAAATGATTATCCCTGGTTGCTAACTTCCTCGAAATGAGAACCTCAATCATG
TATGAATCCTTAGGGGTGGGCTTCATACTTCAATGTACCTCCGCTTGAAACAGGCTCTAA
TCACCTATTGTGCTTATATTTGAAGTTCTGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_21353 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g05870.1	343	1e-63	protein\|harpin-induced protein 1 domain containing protein, expressed
Brachypodium v1_2	Bradi4g25130.1	295	4e-62
Arabidopsis v10	None