barSeed - Barley Seed Development Database

Probe CUST_4910_PI390587928

Source Contig U35_21354

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4910_PI390587928	Hv_44K_v2	GTTATCAGATTAGAATTGCTCGTGAGAAATGAAATGAGGAGTAGCAATTTTGGTCGTTAA	667	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	10.506	6.865	1.225	0.805	0.558	0.640
Raw	279.161	298.296	45.102	45.190	10.932	14.404

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70735.1	750	2e-23	663 - 720	100	58 / 58	plus	ABC14330
MLOC	MLOC_70735.2	591	2e-23	289 - 346	100	58 / 58	plus	ABC14330
JLOC1	JLOC1_46956.1	1008	1e-23	683 - 740	100	58 / 58	plus
Harvest21	ABC14330	742	3e-25	668 - 727	100	60 / 60	plus	ABC14330
Harvest35	U35_21354	742	3e-25	668 - 727	100	60 / 60	plus

Contig Sequence (742 bp)

>U35_21354 742 Hv_44K_v2
GCCCATGAACACCACCACACCCAGCCCTCCACCTCCTCCTCGTCCCTCGCTCTGACCCTC
ATCGAGAGCTGCAAGGGCCTGCGCGGCACCACGAGACCAGCTCGCTCTGTCCACGCCGCC
GGCCGCCATGCTTCCGCTCGCCACAATGTCCGCGCCGAGCTCGCTTCTCCTGCGCCCCGC
CGCGCGCCACAGGACGGGGAGAGAACCAGGACGAAGCTGGGGAGAACCATCTATCTCGGG
TTTGCAATCTCGGAGTAATAAACTCGGCAACGCCATCTGTGTGAAAGCAAACATAACGTG
CTGCGCCAACCAGACGCAAACCGCGAAGCGCAAATCGTTCTCGGGACCCACCTCTCCACC
GTCAGGCTCAGTTAAAGAGAAGGTGAAGCCGAGGCTCGACGACGGGGGCGTCGGGTTCCC
GCCGTTTCGGTTCGGCGGAGGAGGCGGGGGCGGCGGCGGTGGCGGCAGCAGCTCCTCCGG
TGGGTTCATCCTCTTCGTGATCGTTTTGCTCCTGGACTACCTGAGGGAGTTCGAGAGGAA
CCTGCAGAACGGGCCGCGGAGGGGCAGCGACTACGACAGCGGGCTGGCACCACAGTAGTA
GCTTCATTTTAGTACGTAGCTTGTTTCGCAGACAGTCGGGTGATGGTCGGTGGTTGATGT
AAGCGGTGTTATCAGATTAGAATTGCTCGTGAGAAATGAAATGAGGAGTAGCAATTTTGG
TCGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_21354 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None