barSeed - Barley Seed Development Database

Probe CUST_4906_PI390587928

Source Contig U35_21358

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4906_PI390587928	Hv_44K_v2	CGACACCTACACCATGTCTATCCATATTCTGTCATATTTGATGTGAATAACTGTATAGTT	1056	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.617	1.903	1.186	0.669	0.211	0.164
Raw	1680.570	3073.540	1688.203	1500.202	165.230	140.344

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74715.1	1264	3e-21	1211 - 1264	100	54 / 54	plus	ABC18292
JLOC1	JLOC1_49818.1	1534	8e-25	1274 - 1333	100	60 / 60	plus
Harvest21	ABC18292	1120	6e-22	1057 - 1116	97	59 / 61	plus	ABC18292
Harvest35	U35_21358	1157	3e-25	1057 - 1116	100	60 / 60	plus

Contig Sequence (1157 bp)

>U35_21358 1157 Hv_44K_v2
TCCCGGGCTCTTGCATGCTATTCAGGTCCCGAGAATTATGAAAGCCAGTATGGTAAGACG
TTCATTTGGGTCATCAAGTTTGAGGGGGCGTTCATTTTCAAATCAAGGTAGCTATTGGCT
GGCGATAGTTGACAATTTGAATGAACTCTTGAATATCTTGCGAGAAAATTGTGTCCCTGC
TATTTTTATTCGGAAGATATTTACCCAGATTTTCTCATTTATCAATGCTCAACTTTTCAA
TAGTCTACTTGTGCGCCATGAGTGCTGCTCTTTTAGCAATGGAGAATATGTAAAACAAGG
ATTGGCACAACTAGAGGTGTGGTGTGGAGAAGTGAAACCAGAGTATGCAGGATCTGCATT
GCATGAACTCAGGCACATAAGGCAAGCTGTTGGTTTCTTGGTCATATTCAAGAAGTTCAG
AATTTCATATGATGAGATAGTCAATGATCTCTGCCCAGTGCTAAGTGTCCAGCAGCTCTA
CAAAATATGCACGCAGTACTGGGATGACAAATATAACACAGAGAGTGTATCTGAAGAAGT
TCTTGATGAAATGAGAACTTTGATGACAAAGGAATCGGACCATAATGCTTCAGAGGGTGC
CTTTTTACTGGATGATGAAATAAGCATGCCGATATCACTTGAGGAGATAGCAGATTCCAT
GGATGTTAAGGAATTTCAAAACGTGGCCCCACCATCAGAACTCGTCGCAATGTCTGCCTT
CCAGTTCTTGAAAAGTTGACCGGGCCCTCTTCCCAATTCTTGAAAAGCTGATCGAGCCCT
CCAAGATGCTGTCTGTTCATTCCCTTGGACATGTTCTGCTGAACTGTGCCAGCAGATCTA
TGTATTCTTCCTCATCAATGTTGTAAATTCAACCTAGGGTTTCCCTTCTGCCCTGCAGTT
ATGTTGTGCCATGTAAATCATCATTCTTTCCTAGATAGATTGGTCTTTTCTCCCAATTTT
TTGTTGGCTGGGTTGGGAATAATTTCTTCACCCTCCCAAATCCCCGTCACAAAAAGAGTG
GAGTAATTCATTCTTTGTAGCATATAGAACAAAGAGCGACACCTACACCATGTCTATCCA
TATTCTGTCATATTTGATGTGAATAACTGTATAGTTTAACATAATTTTTTCTTCAATTCC
AAAAAAAAAAAAAAAAA

Homology of Contig U35_21358 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g64290.1	1472	9e-95	protein\|myosin, putative, expressed
Brachypodium v1_2	Bradi3g29700.1	1515	9e-124
Arabidopsis v10	AT5G43900.3	1565	4e-72	\| Symbols: MYA2 \| myosin 2 \| chr5:17657241-17667413 REVERSE LENGTH=1565