barSeed - Barley Seed Development Database

Probe CUST_4905_PI390587928

Source Contig U35_21359

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4905_PI390587928	Hv_44K_v2	ACCCCTTCTATTGTACAATGTGGAATGTGAATTGTTCTGCTGCTTTTTATCTTCTGATAG	1343	GeneList: lightyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.086	0.193	1.204	2.220	1.203	1.144
Raw	36.775	136.898	697.284	2019.543	381.308	397.711

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74526.1	2026	6e-24	1955 - 2013	100	59 / 59	plus	ABC17314
JLOC1	JLOC1_49664.2	1707	3e-24	1591 - 1649	100	59 / 59	plus
JLOC1	JLOC1_49664.1	1948	3e-24	1832 - 1890	100	59 / 59	plus
Harvest21	ABC17314	1451	3e-25	1344 - 1403	100	60 / 60	plus	ABC17314
Harvest35	U35_21359	1451	3e-25	1344 - 1403	100	60 / 60	plus

Contig Sequence (1451 bp)

>U35_21359 1451 Hv_44K_v2
ACGTTGGTGGACATGCCTCTCAACAGCTTCCCCTCAACGGGCTCTGAAGAAACTCTCAAA
CTCAAGGTGGATGCAGCTCGGGATAAGCTATATGTTGATGTCGGGTTTTGGGGAGGCCTT
GTACCCGAGAACGCCTTGAACCCAAGCAAATTGGAGAGCCTGCTAAATGCAGGAGTGTTA
GGGCTTAAGTCTTTCATGTGCCCCTCTGGTATCAACGACTTCCCCATGACAAATTCAACT
CATATCGAGGAGGGCCTAGTTACATTGGCAAAGTACAAGAGACCCTTGCTTATCCATGCA
GAACGCATACCGGATGTCGCGAGTGATGAGGAGCTTGATGGTGAATTGGATCCTCGATCA
TACGCAACATACCTGAAATCTAGAACACCTGCATGGGAGGAATCAGCCGTTAGAGATTTG
AAACGTGCCATGAAAGACACTGAAGTGGGGGGTCGGTCAGAAGGAGCTCATCTTCACATT
GTTCATCTCTCAGATTCAAAAACTAGCCTCAGGCTTCTAAAGGATGCAAAACACAGTGGC
GCAAAAGTCACTATAGAAACCTGTCCTCATTACCTCGCATTTTCGGCTGAGGAAGTTCCA
GACGGGGACACTCGTTTCAAGTGCTCTCCTCCCATACGTGATGCTGCCAACAAGGAAAAC
CTCTGGGAAGCTCTGCTTGACGGGCACATCGACATGCTCAGCTCAGACCACTCGCCGTCG
ACTCCTGATCTCAAGCTAATGGAGGAAGGCAACTTCATGAAGGCATGGGGAGGTATCTCA
TCTCTGCAGTTTGTCCTCCCTGTAACATGGTCACACGGGAAAAAGTATGGCATCACCCTG
AACCAGCTAGCCTCATGGTGGAGCGAGAAGCCCGCCGAGCTCGCGGGGCAGAAGAACAAG
GGGTCTATTCTGCCGGGGTACCATGCCGACATTGTGGTGTGGAATCCCGAGGCACAATTC
CATCTCGACGACAGCCATGCCGTATACCACAAGCACCGGAACATCTCGGCGTACCTTGGG
AATGAGCTATCGGGCAAGGTCCTGTCGACATTCGTGAGGGGGAACCTAGTGTTCGCCGAA
GGAAAGCACGCTGGGGCCGCCTGCGGCGCCACCATCCTCGCCAAGTAAAACCGTAGAGCT
AGAATGTTGTTGCCGATTTCTAGCGTATATGATCGTGTGCGCTTGTGTAGTATGTATGTG
TGCAGGTCTGTAGTTGTTTCCCTGTGTATAATTTGGATCCATCGCATGCATCCATCCATC
CCATCCCCCACCATTGTTGTATACCCACCCATTCATTGGACAGCACCAGTGTAGGTTATA
TCTCTGAATTGTTCAGATGCAGTACCCCTTCTATTGTACAATGTGGAATGTGAATTGTTC
TGCTGCTTTTTATCTTCTGATAGTATCTATGAAAGGAATGTGAATAGTTCTGCTAAAAAA
AAAAAAAAAAA

Homology of Contig U35_21359 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g58390.1	220	1e-100	protein\|allantoinase, putative, expressed
Brachypodium v1_2	Bradi5g26410.1	511	0.0
Arabidopsis v10	AT4G04955.1	506	0.0	\| Symbols: ATALN, ALN \| allantoinase \| chr4:2522301-2525259 REVERSE LENGTH=506