barSeed - Barley Seed Development Database

Probe CUST_4903_PI390587928

Source Contig U35_19040

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4903_PI390587928	Hv_44K_v2	TTGCATCTACCCTGCGTCGTAATTAATTGGTTGCTCAATAACGCTATGCTTGAGAAAAAA	979	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	8.559	6.557	1.791	0.483	0.091	0.099
Raw	1306.310	1689.094	380.007	176.431	10.134	12.675

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15383.1	2713	7e-23	2561 - 2617	100	57 / 57	plus	ABC13984
JLOC1	JLOC1_10551.1	2206	4e-23	2025 - 2081	100	57 / 57	plus
Harvest35	U35_19040	1047	3e-25	980 - 1039	100	60 / 60	plus

Contig Sequence (1047 bp)

>U35_19040 1047 Hv_44K_v2
CTTCGGGTGTCTCCAGAAGGCCACCGGCACGGCGACGCCGCCGCAGGGCCTCCTCGGGCT
CGGCCGCGGGCCGCTGTCGTTCCTGTCCCAGACCAAGGACATGTACGAGGGCACCTTCTC
CTACTGCCTCCCGAGCTTCAAGTCCCTCAACTTCTCCGGCACGCTCAGGCTCGGCCGCAA
GGGCCAGCCGCTGCGCATCAAGACGACGCCGCTGCTCGTCAACCCGCACCGGTCCTCGCT
CTACTACGTGGGCATGACAGGCATCCGCGTGGGCAAGAAGGTGGTGCCGATCCCGCCCGC
CGCGCTGGCGTTCGACCCGGCGACGGGCGCAGGCACGGTGCTCGATTCCGGCACGATGTT
CACCAGGCTTGTGGCGCCGGCGTACGTGGCGGTGCGCGACGAGGTCCGCCGCCGCATCCG
CGGCGCCCCGCTCTCCTCCCTCGGCGGGTTCGACACGTGCTACAACACGACGGTGAAGTG
GCCGCCGGTCACGTTCATGTTCACCGGCATGCAGGTGACGCTGCCCGCGGACAATCTGGT
GATCCACAGCACGTACGGCACCACCAGCTGCCTGGCGATGGCGGCGGCCCCCGACGGCGT
GAACACGGTGCTCAACGTCATCGCCAGCATGCAGCAGCAGAACCACCGCATCCTGTTCGA
CGTGCCCAACGGACGCGTCGGCTTCGCCCGCGAGCAGTGCACCGCGGCTTGATTACCCCG
CTGCCGGTAGCTGGGAACCGAGGCCGGACCAGCCTCTGCGGCCTGCGCCACTGTTGCCTG
TCCGTTGGTGCCGGACCTGCATGCTGGTGATTTAATTATTTTGTAGCCTAGTGAGCGACT
GAGCGTGTTGTCTCCATCGATGTGCAAGATCTTGTGTCTTTCTTTCTTGTTTCTGTAATA
TCATTTGTGTGTCATGGGTTTCTAGTAATTTCCTGCTTTTAAGGTTGGGCTTGTTAGGGT
TTAAGAGGGGGTAGTGTATTTGCATCTACCCTGCGTCGTAATTAATTGGTTGCTCAATAA
CGCTATGCTTGAGAAAAAAAAAAAAAA

Homology of Contig U35_19040 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g46480.1	450	7e-132	protein\|eukaryotic aspartyl protease domain containing protein, expressed
Brachypodium v1_2	Bradi1g19070.1	461	2e-103
Arabidopsis v10	AT3G54400.1	425	2e-104	Eukaryotic aspartyl protease family protein \| chr3:20140291-20142599 REVERSE LENGTH=425