barSeed - Barley Seed Development Database

Probe CUST_48_PI415269222

Source Contig TA35469_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_48_PI415269222	Hv_44K_v2	GTCAGCATTGTTGGCGAGCTAAATCAAATTAAATTAAACTAAGCTAGCGATTCATCATCA	1324	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5621.1	2053	2e-24	1596 - 1655	100	60 / 60	plus	ABC05219 ABC33851
MLOC	AK365718	1471	6e-24	1326 - 1384	100	59 / 59	plus	ABC05219
JLOC1	JLOC1_3631.1	2479	8e-25	1636 - 1695	100	60 / 60	plus
Harvest21	ABC05219	1507	3e-25	1316 - 1375	100	60 / 60	plus	ABC05219
Harvest21	ABC05220	597	1e-23	120 - 179	98	59 / 60	minus
Harvest35	U35_16375	1513	1e-23	1322 - 1381	98	59 / 60	plus

Contig Sequence (1389 bp)

>TA35469_4513 1389 Hv_44K_v2
CGGCACGAGGAGCCGCTCTACTATAATAGAACGAAAAAACGCAAGGGCTCCAAACGGCCA
GACCACATACATCGGCCAAGGGCAAGGGCAGGGGCTGAGAGGAGAGAGCTTAGGCAATGG
AGCTCCGGGCCTCGTCGTCGCTCCTGCCCTGCATCCTGCTGCTCTCGCTCTTCTCATCAG
TGGGCACAGTGTCGGCGCAGCAAAAGTTCGGCATAAACTACGGGCAGATCGCAAACAACC
TGCCGGACCCGACGCAGGTGGCGAGCCTGCTCCGGTCGATGAACGTGAACAAGGTGAAGC
TGTACGACGCGGACCCCAAGGTGCTGACGGCGTTCGCCAACACGGGCGTGGAGTTCATCA
TCTCCGTGGGCAACGAGAACCTGCAGACCATGGCCAGCAGCCCCGGCGCGGCGCGGCAGT
GGGTGGCGCAGCACGTGCAGCCCTTCATCCCGGCCACCCGCATCACCGGCATCATCGTCG
GCAACGAGGTGCTGGGCAACAACGACACGGCCATGGCGGCCAGCCTCGTGCCCGCCATGC
AGGCCGTCTACGACGCGCTGGCCGCGCTCGGGGTGGGCGGCGGCCAGGTGACGGTCTCGT
CGGCGCACTCGGTGAACGTGCTCGCCACCAGCTTCCCGCCGTCGTCCGGCGCGTTCCAGG
AGGGCGTGGCGCAGTACGTGAAGCCGCTGCTCGACTTCCACAGCAAGACGGGCTCCCCGT
TCCTCATCAACGCCTACCCCTTCTTCGCCTACAAGGGGAGCCCCGGCAGCGTGTCGCTGC
CGTACGTGCTGTTCCAGCCCAACGCCGGCGTGCGCGACGGCGGCCTGGTGTACGACAACA
TGCTGTACGCGCAGATCGACGCGGTGTACGCGGCCATGAAGGCCATGGGGCACGCCGACA
TCGGCGTGCGGGTGTCGGAGACGGGGTGGCCGTCCAAGGGGGACGAGGACGAGGTGGGCG
CCACCGCGCAGAACGCGGCGGCGTACAACGGCAACCTCATGCAGCGGATCGCCATGAGCC
AGGGCACGCCGCTCAAGCCCAGCGTGCCCATCGACGTGTTCGTCTTCGCGCTCTTCAACG
AGAACATGAAGCCCGGCCCGGCGTCCGAGAGAAACTACGGCCTCTTCTACCCCAACGGCT
CGCCGGTGTACGCCATCAACGCCGGCACCGCCGGGGCCAACCCCGGCTTCGGCGGCTCCG
GCGGGGGCTCGTCGGTGGGGCGGTTCGACCCGTACTCGTCGCAGTCCATGTTCTCGTCCG
CGTCAAGACTGGCGGTAAGAAGAAGATTATCTTCTTTGACGCTACTGCTGGTATTGCCCA
TGGTGTCAGCATTGTTGGCGAGCTAAATCAAATTAAATTAAACTAAGCTAGCGATTCATC
ATCAAAAAA

Homology of Contig TA35469_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g64170.2	394	0.0	protein\|glycosyl hydrolases family 17, putative, expressed
Brachypodium v1_2	Bradi2g55690.1	399	0.0
Arabidopsis v10	AT2G27500.1	392	2e-133	Glycosyl hydrolase superfamily protein \| chr2:11752364-11753844 REVERSE LENGTH=392