barSeed - Barley Seed Development Database

Probe CUST_4896_PI390587928

Source Contig U35_19045

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4896_PI390587928	Hv_44K_v2	TTTGTACCGTAGACTTTTGTTTGATTGTGTCGACCCATGTTAATATAATATTTTCCCGCG	1533	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364300	1647	6e-24	1589 - 1647	100	59 / 59	plus	ABC11346
MLOC	MLOC_57285.1	4013	7e-23	137 - 196	98	59 / 60	minus	ABC11346 ABC20133
JLOC1	JLOC1_37104.1	4090	4e-23	3859 - 3918	98	59 / 60	plus
Harvest21	ABC11346	1610	3e-25	1534 - 1593	100	60 / 60	plus	ABC11346
Harvest35	U35_19045	1613	3e-25	1534 - 1593	100	60 / 60	plus

Contig Sequence (1613 bp)

>U35_19045 1613 Hv_44K_v2
GAAAACCACTCCTCCAGAACCAGAAATCCACCAACCAACCGGAGAATCCCTCCCCCCCGT
CCGCGCTCCAGCGCCTCTGCGTGCTCCTCCCCCGCTCCCGCGGATTCGAATCTGCTCGCG
GCGGGCCGGATCCCGCTCGCTCCATGGCGGAGGGCTTCGGGCGCTGGGAGTCGGATCCGC
TCTTCCCCGCGGCCGAGTGCGTGCAGGACTCCGCCGACAGGATGGAGGGTGTTTACCGCT
TGCTTTTGCATGAAAAGAAAGTTATACAAGATGATGCTTCAGATGCGAAACTTCATGCAC
CGATACAGTATGAGAGAGATGTGACTACTGCTCTCGGAACTACCAAGTGGCAGTTAGAGC
AATTTGAGAGGGAGGTGAATGCAGCTGCATTCGCTGACAAGTCAACTTCAAGGGAAAATG
CAATCTTAAAATTTAGGCAATTCATTAGAGCTATAGCTGAGCAAATTTCTGAGGTGGAAG
AAAGCTTGAAGACTCTTAGGACAGATTTCAGTAGAACTCCAAAATCTCCATACTCCTCAA
GTGAACAGGATGGAGATGGGCTGGCATCTTTCCTTTCTGGTGGCAACACACATAGTCATG
CATACTACTCCACTGATACAGATGAAATTACTGAACTTAAGATCGACAGTCCGCCTATGG
TGAATGGTTATCATTCTGCCCAAGAACATACGACACATGAACTCAGATATTCAGGAAATG
ATTTGGAAGGAGCATCCAAATTGCAATGTTCACGTGGAGAAAGTGCATCCGAAGGAGATC
ATAATGGTAGCACTTTGTATAGTTTGGATGCTGGTGATTCGCTAGGTACGAGCCACCGTT
ACAAGAACAAACTGAGCAGTCAGTACCGTGGTTTTATGAGAAACTTATGGTTTACAAATA
GAGACCATGAGAGCTTTACAAAGAGGAGGAAAGATGGAGAAGTAGTTGATGGCTTGAGAA
ATGGCAATATATTACCTCCCTTCAACCTGCGTACATCAGGAAGGACTATCTATTGCTGGC
CTGAACTTATCAAGAGAACATTAAGTAGATCTGAATATTCTACACGCTACAGTCACCCTC
AACTTTTTGTAGCAACATCATTACTAGTTGCACTTGCTGTCCTTGGTGTGGTGGTTTTGC
ATGTCAAGTGAGATGAATGCGGCGTGTATCTAATTTTGGTCCCTGTGTGTTGTACCGGTC
ACTGCGCCCGGCCGTCGGAGTGCCCTTATGTATGTATGAGCCGCTTTGTTGCATCGCATC
GCACCAGTCAGTCTGTGCGATGGAAGAAGGATCACTATGCTTTTGATCGCCACAGGAGGT
TTGCCGACGTTTTTGCGCAGTTGGTAGCCATGGCCTGGCTCCTGGTCCTCGGTAGCTCGA
CCGGAGCACCAGACCAGAGGATGCTGCCTGTGATACCGATGCTCGTGCTGATTGTCATTT
GCCGGGGCCAAAAACCGACACGTCGACGTGATTGTGCTGTATTTCTTCACGATGTGGCCT
AATCAACAGTTGCCAGATCGCTGAGACCAACAATTTGTACCGTAGACTTTTGTTTGATTG
TGTCGACCCATGTTAATATAATATTTTCCCGCGAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_19045 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g37150.2	308	2e-134	protein\|syntaxin 6, N-terminal domain containing protein, expressed
Brachypodium v1_2	Bradi2g23920.1	335	4e-173
Arabidopsis v10	None