barSeed - Barley Seed Development Database

Probe CUST_4895_PI390587928

Source Contig U35_16182

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4895_PI390587928	Hv_44K_v2	AGAAGAAGACTTTATTGATCCGAGTAAGTGTTCTTGGGCGGGAAGAAAGGAGCCATGATA	148	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_50953.1	1769	2e-24	337 - 396	100	60 / 60	plus	ABC04880 ABC37565 ABC42991
JLOC1	JLOC1_32509.2	1835	8e-25	227 - 286	100	60 / 60	plus
Harvest21	ABC04882	735	3e-25	149 - 208	100	60 / 60	plus
Harvest35	U35_16182	735	3e-25	149 - 208	100	60 / 60	plus

Contig Sequence (735 bp)

>U35_16182 735 Hv_44K_v2
ATCCCCCTTCTCCCTCCTCGTGATCTCCGGGTTCCCGTCTCAGATTCCCAGGTTCGATCT
TGATCCCCCAGCTATCCCCACCTGCCTCTCCCGTCCTCGAATCCTTCGTCGCAGAGGCGC
CGCTTTTACCTCTTCTTGCCGCGATTTGAGAAGAAGACTTTATTGATCCGAGTAAGTGTT
CTTGGGCGGGAAGAAAGGAGCCATGATACCTGCTGTGAAGCTCTCTCCGGCCGCCTTCTC
TGTCACCAATCAACGGACTAAATCAGCTTTGGTTCCATCGGTGTCCATTCTCAACACAAA
TTCTTTTGTGTCCTGCTCCTTTAGACCACTCTACCTCACACGGATAGATGACCCACAGAC
TTCTGAGCTGAAGCCTCGGAGGCAGCTTCTTGACTTCCAGTGTGCAGCTTCAGCGGCTGA
TGACAAGGAGTCAAAGGCTGAGGTGGTGCCAGCTAGCTCAGAAGCAGCACAAAAGTTGAA
AATTTCAATCTATTTTGCGACTTGGTGGGCGCTTAATGTGATCTTTAACATCTATAACAA
GAAGGTTCTCAATGCTTTCCCGTATCCCTGGCTCACCTCCACACTATCTCTCGCCTGCGG
CTCAGCGATGATGCTCTTCTCATGGGCCACCCGCCTAGTTGAGCCCCCCAAGACTGACTT
AGATTTCTGGAAAGTGCTTTTTCCGGTTGCTGTGGCTCATACAATTGGACATGTTGCTGC
CACAGTGAGCATGTC

Homology of Contig U35_16182 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g08840.2	388	2e-79	protein\|phosphate/phosphate translocator, putative, expressed
Brachypodium v1_2	Bradi3g15310.1	388	3e-86
Arabidopsis v10	None