barSeed - Barley Seed Development Database

Probe CUST_4892_PI390587928

Source Contig U35_16184

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4892_PI390587928	Hv_44K_v2	ATTCACCTAAGAAGAGTGTTTTACTTGCTTTGGCTGCTCATGCATCTGATTCCAAAGAGG	438	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68056.1	2269	7e-23	1183 - 1242	98	59 / 60	minus	ABC04653 ABC05574 ABC45371
MLOC	MLOC_68056.2	2140	7e-23	1058 - 1117	98	59 / 60	minus	ABC04653 ABC05574 ABC45371
JLOC1	JLOC1_44991.1	2295	4e-23	1026 - 1085	98	59 / 60	plus
Harvest21	ABC05575	679	1e-23	439 - 498	98	59 / 60	plus
Harvest21	ABC05574	2169	1e-23	980 - 1039	98	59 / 60	plus	ABC05574
Harvest35	U35_16184	755	3e-25	439 - 498	100	60 / 60	plus
Harvest35	U35_16183	2257	1e-23	980 - 1039	98	59 / 60	plus

Contig Sequence (755 bp)

>U35_16184 755 Hv_44K_v2
TGCTCCGCGTTGAAGATAATTCTTCAGCAGCACAATCTCCTTACACAGCTGCTATTCCGC
AATATAGAATTGTGCTTACCAAACCAGAGGATGCCACACATATCAACAAGTCTTTCAGTC
TTAGCAATGGTCATGTCGTCTATGACAGTCAACATCCTTGCAGGGCAAATGTGGCTGTGC
GACGGGAGCTTCACACACCAGCTTCTGACCGGTCCTGCATTCATTTGGAGTTTGATATTG
CAGGAACTAGCCTCACATATGAGACTGGAGATCATGTTGGTGTGTACGCAGAAAAGCTAT
TAGATTATTCGCCAGATACTTATTTCTCAATTTATGCTGACCAAGAGGATGGCACTCCAC
TTTTTGGGGGCTCTTTGCCACCTCCTTTCCCTCCCTGTACCGTGAGGGTTGCACTTGCCA
GATATGCCGATCTGTTGAATTCACCTAAGAAGAGTGTTTTACTTGCTTTGGCTGCTCATG
CATCTGATTCCAAAGAGGCCGAGCGGCTAAGACATCTAGCATCCCCTGCTGGAAAGAAAG
AATATTCTCAGTGGATAATCGCTAGTCAAAGAAGTCTCTTGGAAGTTATTTCGGAGTTTC
CATCAGCGAAACCTCCGCTTGGTGTCTTCTTTGCAGCTATTGCTCCTCGCCTTCAGCCGA
GATACTACTCAATATCTTCCTCACCAAGAATGGATCCTTCCAGTGGGGCTTTGCCCATGA
ACTAGTGAACATGTTACATGAATTCTTGTTGGTGC

Homology of Contig U35_16184 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g38620.1	715	2e-114	protein\|NADPH reductase, putative, expressed
Brachypodium v1_2	Bradi4g37770.4	636	3e-116
Arabidopsis v10	AT4G30210.1	712	9e-87	\| Symbols: ATR2, AR2 \| P450 reductase 2 \| chr4:14796900-14800578 FORWARD LENGTH=712