- Probe CUST_4885_PI390587928
- Source Contig U35_42450
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_4885_PI390587928 | Hv_44K_v2 | TCACTGGTGATCTGATTTTGCACCTGTTAGAACTTCACACTGATTGGACATAGTTATTTT | 55 | GeneList: None MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.700 | 0.659 | 0.929 | 2.304 | 1.311 | 1.196 |
| Raw | 3.459 | 5.229 | 8.726 | 38.474 | 5.766 | 5.851 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_21303.1 | 925 | 2e-24 | 583 - 642 | 100 | 60 / 60 | minus | ABC38126 |
| JLOC1 | JLOC1_14786.1 | 640 | 8e-25 | 317 - 376 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC38126 | 570 | 3e-25 | 56 - 115 | 100 | 60 / 60 | minus | ABC38126 |
| Harvest35 | U35_42450 | 570 | 3e-25 | 56 - 115 | 100 | 60 / 60 | minus |
Contig Sequence (570 bp)
>U35_42450 570 Hv_44K_v2 TTTTTTTTTTTTTTTTTATAAAACTTATAGTGAAATTTCTTCAGCTTATAAAATAAAAAT AACTATGTCCAATCAGTGTGAAGTTCTAACAGGTGCAAAATCAGATCACCAGTGACATGG ATCGAACTAAGATGACTAGGTAAAAGTATGAAGCAGCATTGCGGGCAACGGATAATCGGA CCAAAGAGCTCCACTATGGTAACCCGTATAAATGGCAATCCGAACCATTGGCATATCATA CCCACTTTCGACTTTCGTATGTACGATGGGTCACCGCCAGAATGTATATGTAGTACATAT TTCTCTAGGATGAGGATGGGTAACATCAGCACCAAATATAATGGTTGGTCTGTCTCTAAC AAGGGGAATTCTCGTTGACAAAGCATCGACGAGTACAGTATTTCTTCCTCCCACCTTAAC ATTGATTTTAAGGGCGACATTTGCAAGATACTGCAGGCTCATCTTAAAAATATGTTTCGT CAAACAGCATTGAGAGACCAATCCAAGATCTGTCTCACATATTCTTTTGAGATTACCATA AAGAGAACCATTATTGTCAGGCAAAATTGC
Homology of Contig U35_42450 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |