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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_4883_PI390587928Hv_44K_v2TACCGTCTCCTGTTTATCAAGGCCCTACTATTAGAAACTGCATTTGCAAGCAGCTGATGC335GeneList: lightyellow
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.4590.5521.4341.9891.2431.236
Raw 4.4719.33324.72051.70012.09512.740



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
Harvest21ABC381276563e-25336 - 39510060 / 60plus
Harvest35U35_424516563e-25336 - 39510060 / 60plus



Contig Sequence (656 bp)

>U35_42451 656 Hv_44K_v2
GGCCCGCGCAATTAACGCCACCGCTAATAACGAGCGCGGCTGCGGCCCAGCAATACCAAC
ACACACCACCGGCAGCATACCGGTCGATCGACTCGACATGTCGTCGAGGCCGAGCAGGAG
CGACGCGCACCTGTCCCCGGTGGACGAGGCGGTGAGGGTGGACGAGGTGCGGGGGTACTA
CGACGGCGCGGCTCCCAAGCGCCACTCCAAGCCCTCCCGCAGCGACCACTCCGCCGTGTA
CACCGACGCGCTCGCCGGCCCCGGCGTCGACGGCTCCCACCCCGAGCTCGACAAGTTCCA
GGACCTCGAAGCCCACTCCGAGGTCCGTCGCACCGTACCGTCTCCTGTTTATCAAGGCCC
TACTATTAGAAACTGCATTTGCAAGCAGCTGATGCCGCGGTGCGGGCGGGCGGTTTGTCG
TCGCAGAAACTGGTGTGCGAGGGCGGGAAGGCCGGCGAGGAGTTCGTGGAGACGGAGTAC
TACAAGGACCTCGGCTGTGTCGGCAAGCAGCATCACACGACTGGGACGGGCTTCATCAAG
GTGGACAGGCCCGCCGGCGGCTCGTTCGAGCTCTCTGAAGACCCGGGTGCGACGGAGCGC
CATGCTTCCTCCAAGGGGAACCCCGCCACAAACGACTGGATCCCGTCAGCTGACAC



Homology of Contig U35_42451 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os03g15920.11634e-58protein|expressed protein
Brachypodium v1_2Bradi1g67120.11614e-64
Arabidopsis v10None