barSeed - Barley Seed Development Database

Probe CUST_4878_PI390587928

Source Contig U35_42454

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4878_PI390587928	Hv_44K_v2	TCAGTAAACGTAGCTGGTCAGCAGATGCTTGGACAAGGTGCGACACAGGAGGGCAGCTCA	418	GeneList: orange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.877	0.977	2.175	2.237	0.854	0.722
Raw	84.230	147.443	285.258	471.334	63.603	58.530

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13446.2	1797	2e-24	910 - 969	100	60 / 60	plus	ABC38131
MLOC	MLOC_13446.1	1865	2e-24	910 - 969	100	60 / 60	plus	ABC38131
JLOC1	JLOC1_9107.2	1618	8e-25	910 - 969	100	60 / 60	plus
JLOC1	JLOC1_9107.1	1737	8e-25	910 - 969	100	60 / 60	plus
Harvest21	ABC38130	535	3e-25	419 - 478	100	60 / 60	plus
Harvest35	U35_42454	535	3e-25	419 - 478	100	60 / 60	plus

Contig Sequence (535 bp)

>U35_42454 535 Hv_44K_v2
GGAGCAGCGGTCGCCGCCCAAGCTGGCGGAGGGATACTACGAGATCGAGACTATCCGCCG
CCGCCGACGCCGCCAGGGCCAGCTACAGTACCTCGTCAAATGGCGTGGGTGGCCGGAGAG
CGCCAACACATGGGAGCCTGCAGAAAACCTGAGGGCCTGCTCTGATTTTGTTGATGCCTT
CGAGAAGCGACAGCAACCAAGGTCCTATGGCAAGCGCAAGCGCAAGCGCAAGATCTCCAT
TACTCCGGTGGTAACTCCTAACCCTTCTTCTCATGGTAGAAGGGGCCGCCCACGGCGTTC
AGATCCTCGGTCTCTGTCCCAACGTCCTGCCCCAGAGCGCAAGATATTGCCTCCCAGAGC
AAGTAGCAGGAGAGGTACTGATAACAGCAACAGGCACTTGGTTACTGGGTCTGCTGCATC
AGTAAACGTAGCTGGTCAGCAGATGCTTGGACAAGGTGCGACACAGGAGGGCAGCTCANA
TGTGCTTTCGGTTGGTCTGCCGTCTGTTGTGGTTCATCAACAGGATGAGCATCAG

Homology of Contig U35_42454 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None