barSeed - Barley Seed Development Database

Probe CUST_4877_PI390587928

Source Contig U35_28161

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4877_PI390587928	Hv_44K_v2	TGCAAACAGTTTGTATTCGATTTACTCTCTACTAGTACAAATGCCCGTGCGTTGCAACGG	184	GeneList: bisque4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.184	1.992	1.612	0.899	0.434	0.556
Raw	169.093	457.122	307.497	274.088	46.191	65.829

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359085	1406	2e-24	1288 - 1347	100	60 / 60	plus	ABC26869
MLOC	MLOC_72205.2	392	2e-24	26 - 85	100	60 / 60	minus	ABC26869
MLOC	MLOC_72205.1	1040	2e-24	30 - 89	100	60 / 60	minus	ABC26869
JLOC1	JLOC1_48029.1	1369	8e-25	1235 - 1294	100	60 / 60	plus
Harvest21	ABC26869	271	3e-25	185 - 244	100	60 / 60	plus	ABC26869
Harvest35	U35_28161	271	3e-25	185 - 244	100	60 / 60	plus

Contig Sequence (271 bp)

>U35_28161 271 Hv_44K_v2
ACCGAGAGGGGCTAGGATCGATGACATCTCTGAAGAAGAAGAGCATTTCTCTGTCAACTG
CTGGATCCGGATGGAGAATGGGTCGACGCACAGCCATGTCACCTATGACCTCTGCCCGGT
TTAGTTAGGTTCAGACTCGTTTCCGCTAGCTAAGGATCTGTTCAGTTTGGAAAGTCCATT
GCAGTGCAAACAGTTTGTATTCGATTTACTCTCTACTAGTACAAATGCCCGTGCGTTGCA
ACGGGCTATAAATTTAAAAAAAAAAAAAAAA

Homology of Contig U35_28161 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None