barSeed - Barley Seed Development Database

Probe CUST_4873_PI390587928

Source Contig U35_42457

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4873_PI390587928	Hv_44K_v2	ATGACTGTATATGGTGAAGATTGGCTGCAACTCTTCTCCCATGCGTACCCAATCTCATCT	171	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248654.1	1902	2e-24	236 - 295	100	60 / 60	plus	ABC21390
MLOC	AK251508.1	1781	2e-24	212 - 271	100	60 / 60	plus	ABC21390
MLOC	MLOC_37606.2	1933	2e-24	1801 - 1860	100	60 / 60	plus	ABC17341 ABC43976
MLOC	MLOC_37606.1	1531	2e-24	1400 - 1459	100	60 / 60	plus	ABC17341 ABC43976
JLOC1	JLOC1_24356.1	1574	8e-25	1442 - 1501	100	60 / 60	plus
Harvest21	ABC38135	637	3e-25	172 - 231	100	60 / 60	plus
Harvest35	U35_42457	637	3e-25	172 - 231	100	60 / 60	plus

Contig Sequence (637 bp)

>U35_42457 637 Hv_44K_v2
TGATTCGGCTCCGTCTTCCGCCTCGGGATAGAACGAGAGCGGCCGCTAGCCACACGGCAC
AGCCCTGTAGAAAGTCAATTTGAGGAAAAACCTTGACCAAAGTGACCAGATGTTTAAGCC
TAGTTGGACCGTGTCCTTCCAAATGAATCAAAGTGTGCTTGAGGCCAAGATATGACTGTA
TATGGTGAAGATTGGCTGCAACTCTTCTCCCATGCGTACCCAATCTCATCTCTGAGCATC
TCACGGGTCACCTCCTCCTGAGTTGACTCAACCACACCAACAAAAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTGGTCTGAGGAGAGCAGAAAACAACAAG
ACCAAGAGAGACCGCGAATGGAACCGGAAGAAGCGGCAGCAGCGCAGGCGAAAGGGGATC
TCCTCCGCAACTTTGAGCGAATCCTCCATGACGACCCCCTCATAGACGAGGTCGGATTCC
TGCATCCCACGCAGTTCCACTCACTACTCGTAGACAGCGCCAACAAATCTGCGTTCCAAT
ACTTCTGGTGCACAGACCACAAGCTTGCCATCTCCTCCGACATCCTACCTGAGCTCTACC
GCGCCGCTCGCCGTGCACATTCTGACACAGCGCTGAA

Homology of Contig U35_42457 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None