barSeed - Barley Seed Development Database

Probe CUST_4871_PI390587928

Source Contig U35_42458

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4871_PI390587928	Hv_44K_v2	TCATCAACTATTACCTTTCCATTGGATCTTGTAAGACGCCGCAAGCAGTTGGAAGGTGCA	438	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51937.1	1698	2e-24	935 - 994	100	60 / 60	plus	ABC16469
JLOC1	JLOC1_33217.2	1766	8e-25	999 - 1058	100	60 / 60	plus
JLOC1	JLOC1_33217.1	1713	8e-25	946 - 1005	100	60 / 60	plus
Harvest21	ABC38137	545	3e-25	439 - 498	100	60 / 60	plus
Harvest21	ABC16469	1105	3e-25	475 - 534	100	60 / 60	plus	ABC16469
Harvest35	U35_42458	545	3e-25	439 - 498	100	60 / 60	plus
Harvest35	U35_7683	1105	3e-25	475 - 534	100	60 / 60	plus

Contig Sequence (545 bp)

>U35_42458 545 Hv_44K_v2
GAGAAGGAGAAGAGGAGGGTCAGGAGGCTGATGGAGGCCGAGGCGGCGGCGAACAAGAAG
TCCGACGATGAGGCGGAGAAGCAGGACGCGGAAGCGGCGGCCGCCGAACCTGCCGTGGCA
GACGACAGTGAACACAATCTAGACGTCACGAAGGTAGAAGGAGAGGCGGAGAAAATTAAG
TCAGAAGAGGTGAAGGAAATTAAGTTAGAAGAGGCTGGCCAGGCAGGTGTATCCGACAAT
CCAATTGTGCCGCAAGATAGAGATGAGGGTCCCAGAGGGTTGTACAAGGGTCTTGGTCCC
ACTTTACTGGGAGTAGGCCCCAGTATAGCAATAAGCTTCTCAGTTTATGAAACTCTACGT
TCGCATTGGCTACTAGAGAGGCCATGTGATTCCCCTATCTTTATCAGTTTGGCTTGTGGA
AGTCTTTCAGGAGTTGCATCATCAACTATTACCTTTCCATTGGATCTTGTAAGACGCCGC
AAGCAGTTGGAAGGTGCAGCTGTGAGGGCCAATGTTTACAAGACAGGACTTGTTGGAACG
TTTGG

Homology of Contig U35_42458 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g66990.1	343	1e-55
Arabidopsis v10	None