barSeed - Barley Seed Development Database

Probe CUST_4850_PI390587928

Source Contig U35_16196

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4850_PI390587928	Hv_44K_v2	CTTCCGCTAAGAATTGTCAGCATTGACAATGTACCAGTTACTGAATTGAATAGACTATTA	1508	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_17405.1	1157	2e-24	1035 - 1094	100	60 / 60	plus	ABC05689
JLOC1	JLOC1_12023.1	1243	8e-25	1035 - 1094	100	60 / 60	plus
Harvest21	ABC05689	1594	3e-25	1509 - 1568	100	60 / 60	plus	ABC05689
Harvest35	U35_16196	1596	3e-25	1509 - 1568	100	60 / 60	plus

Contig Sequence (1596 bp)

>U35_16196 1596 Hv_44K_v2
CCAACCAGGGCAAGCAAGCAAGCAAGAGGAAGCAGCAGCAGCAGCGAGCACGAGCAGCAC
ATGTCACAGAGGGCCAGCGTCCCACACTCCTCCTCCATAGCCTTCGCCCTCCATTCCCAC
CTCCTCCTGTCCTCCGAGATGTGCCCCAGCTCCTACTGGGAATAGAATTAGGAGGCCCAA
ATCCGACACCTTTTCCTCCCAAGGTTCCTCCTTTCTTCTCCCGGATCTATATACGTAGTT
CGGTTCTCCAACCCATCCATCCATCCATCCATCCGCTAGCGGGAAGAGGATATGGGCGTC
AAGGGATTCGTCGAGGGGGGCATCGCCTCCATCGTCGCCGGCTGCTCCACCCACCCGCTC
GACCTCATCAAGGTCCGGATGCAGCTGCAGGGGGAGTCGTCGGCGGCGGCCGTGCCCCAG
CCCGCGCTGCGCCCGGCGCTCGCCTTCCAGGCCGGGGCGCAGACGGTGGCGCTCCCGCAC
GCGCCGACGCCGGCGTCGGTGGCCAAGCCCGGCCCGATTGGCATCTGCACGCAGATCCTG
CGCGCCGAGGGCGCCGCCGGGCTCTTCTCCGGGATCTCGGCCACCATGCTGCGCCAGACG
CTCTACTCCACCACGCGGATGGGCCTCTACGACATCCTCAAGAAGCGCTGGACCCAGGAG
AACGCCGGCGTGCTGCCGCTGCACCTCAAGATCGCCGCCGGCCTCATCGCCGGCGGCGTC
GGCGCCGCCGTCGGCAACCCGGCCGACCTGGCCATGGTGCGGATGCAGGCCGACGGCCGC
CTCCCGCTCGCCGACCGCCGCAACTACCGCAGCGTCGGCGACGCCATCGCCCGGATGACG
CGCGACGAGGGCGTGCGCAGCCTCTGGCGCGGCTCGGCGCTCACGGTCAACCGCGCCATG
ATTGTCACCGCCTCGCAGCTGGCCACCTACGACCAGGCCAAGGAGGCCATCCTGGCCCGC
CGCGGTCCGGGCGCCGACGGCCTGGGCACGCACGTGGCCGCCAGCTTCGCCGCGGGCATC
GTGGCCGCCGCCGCGTCCAACCCCGTCGACGTGGTCAAGACCAGAGTGATGAACATGAAG
GTGGCGCCGGGGGCTCCCCCGCCGTACGCCGGGGCCCTGGACTGCGCGCTCAAGACGGTG
CGGTCGGAGGGCGTCATGGCGCTCTACAAGGGCTTCATCCCCACCGTGTCGCGCCAGGGG
CCCTTCACCGTCGTGCTCTTCGTCACCCTCGAGCAGGTGCGCAAGGTCTTCAAGGACGTT
GAGTTCTAATGCAGACATGCAGTGCAGACCACCGCGCGGCACCATGGATCCATGATGATG
ACGACAAGAAGCTGCCCATTGATGCCGCTGCTGCTAAGAATAACTAGTAGTAGTAGTACT
ACTGGCGATTTGGAGAGATTTCTCCAGTTCCTGCGCCCCGTTGATTGTAGTAATTCGGAT
GGATTTGATCGATTTTGAATGCAATTTATATTTTTAAATAAAAAAAAAAAAATGTCAACT
TTGAGAATCTTCCGCTAAGAATTGTCAGCATTGACAATGTACCAGTTACTGAATTGAATA
GACTATTATTTTTTCTGAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_16196 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g37370.2	328	4e-162	protein\|mitochondrial carrier protein, putative, expressed
Brachypodium v1_2	Bradi3g38410.1	331	9e-167
Arabidopsis v10	AT2G22500.1	313	1e-122	\| Symbols: UCP5, ATPUMP5, DIC1 \| uncoupling protein 5 \| chr2:9563531-9564472 REVERSE LENGTH=313