barSeed - Barley Seed Development Database

Probe CUST_4848_PI390587928

Source Contig U35_16197

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4848_PI390587928	Hv_44K_v2	GCTGCTACGCCGTCTGTACTGTATTGTACATAAACGAAATGGAGTCATTACTTTGTCGTC	568	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.303	1.460	0.951	0.957	0.359	0.458
Raw	634.712	435.434	259.208	425.935	53.795	74.926

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357984	779	2e-24	583 - 642	100	60 / 60	plus	ABC04772
MLOC	MLOC_64374.3	4395	2e-24	2455 - 2514	100	60 / 60	plus	ABC04772 ABC14049 ABC16807
JLOC1	JLOC1_42266.1	3675	8e-25	1717 - 1776	100	60 / 60	plus
Harvest21	ABC04770	650	3e-25	569 - 628	100	60 / 60	plus
Harvest21	ABC04771	646	1e-24	569 - 627	100	59 / 59	plus
Harvest21	ABC04772	452	5e-23	376 - 434	98	58 / 59	plus	ABC04772
Harvest35	U35_16197	648	3e-25	569 - 628	100	60 / 60	plus
Harvest35	U35_16198	646	1e-24	569 - 627	100	59 / 59	plus

Contig Sequence (648 bp)

>U35_16197 648 Hv_44K_v2
GGCAAAGCAAGGGAGCACCACAACCTCGTATTCAGATTTCTTGATAGACAGGATCAGATT
AACACCAGAAGATGATGCAGGCCGCCGTTGCTTTGTCGGCCGTGCTGCCCGTCGCCGTAA
GGTGCAGGCCGGCGGCGAGGAGGAGCAGCAGCGCCACCGTTGCCGGCGGCAGAAGGATTG
TGGGTGGCGGCGGCGTCCGTGCGTCCGCCGCGGCGGCGCCGGAGGCGGACTACAGCTCCA
ACGTCTCGGTGTTCCCCATGGAGGCCTGCGACCTGGTCGGCGGCGAGGCGTGCGACGCGC
AGATGTACCCGGAGACGAAGCTCGGCGGCGGCGCTGCTGCTGCTGCCGTCGCGAGGGCGC
CGGAGGTGGAGAGGGAGTACCTGGCCTACGACGAGCCAAAAACGGTGTTCCCGGACGAGG
CATGCGACGATCTTGGCGGCGAGTTCTGCGAGGCGCCATACCAAACCAGCAAGTAGCTGC
TAGTAGCAGGAGTATTATCAAATGAAGTTGCACTTGTTCTTAGCAGGGATCGATCGATGT
ACATCATGGGAAGCATAAGCAAAAACATGCTGCTACGCCGTCTGTACTGTATTGTACATA
AACGAAATGGAGTCATTACTTTGTCGTCAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_16197 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None