barSeed - Barley Seed Development Database

Probe CUST_4846_PI390587928

Source Contig U35_16198

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4846_PI390587928	Hv_44K_v2	GCCGTCTGTACTGTATTGTACATAAACGAAATGGAGTCATTACTTTGTCGTAAACAAAAA	576	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.722	1.409	0.955	0.875	0.258	0.493
Raw	242.150	191.253	119.714	179.784	17.860	36.867

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC04771	646	3e-25	577 - 636	100	60 / 60	plus
Harvest21	ABC04772	452	6e-22	384 - 443	97	58 / 60	plus	ABC04772
Harvest35	U35_16198	646	3e-25	577 - 636	100	60 / 60	plus
Harvest35	U35_16197	648	6e-22	577 - 637	97	59 / 61	plus

Contig Sequence (646 bp)

>U35_16198 646 Hv_44K_v2
CAGCGAAGCAAGGGAGCACCACAACCTCGTATTCAGATTTCTTGATAGACAGGATCAGAT
TAACACCAGAAGATGATGCAGGCCGCCGTTGCTTTGTCGGCCGTGCTGCCCGTCGCCCTA
AGGTGCAGGCCGGCGGCGAGGAGGAGCAGCAGCGCCACCGTTGCCGGCGGCAGAAGGATT
GTGGGTGGCGGTGGCGTCCGTGCGTCGGCCGCGGCGGCGCCGGAGGCGGACTACAGCTCC
AATGTCTCGGTGTTCCCCATGGAGGCCTGCGACCTGGTCGGCGGCGAGGCGTGCGACGCG
CAGATGTACCCGGAGACGAAGCTCGGCGGCGGCGCTGCTGCTGCTGCCGTCGCGAGGGCG
CCGGAGGTGGAGAGGGAGTACCTGGCCTACGACGAGCCAAAAACGGTGTTCCCGGACGAG
GCGTGCGACGATCTTGGCGGTGAGTTCTGCGAGGCGCCATACCAAACCAGCAAGTAGCTG
CTAGTAGCAGGAGTATTATCCATGAAGTTACACTTGTTCTTAGCAGGGATCGATCGATGT
ACATCATGGGAAGCATAAGCAAAAACATGCTGCTACGCCGTCTGTACTGTATTGTACATA
AACGAAATGGAGTCATTACTTTGTCGTAAACAAAAAAAAAAAAAAA

Homology of Contig U35_16198 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None