barSeed - Barley Seed Development Database

Probe CUST_483_PI390587928

Source Contig U35_44072

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_483_PI390587928	Hv_44K_v2	CATCCCTGAGTCAATCAAAGACTTGTAAAATATGTATTGTGTATCTCTCTATCTGCTCAC	464	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57208.5	2121	2e-24	835 - 894	100	60 / 60	minus	ABC39520
JLOC1	JLOC1_37034.4	2124	8e-25	1208 - 1267	100	60 / 60	plus
Harvest21	ABC41518	591	3e-25	465 - 524	100	60 / 60	plus
Harvest35	U35_44072	591	3e-25	465 - 524	100	60 / 60	plus

Contig Sequence (591 bp)

>U35_44072 591 Hv_44K_v2
TTATAATCTGGTATTTGACAAAAGCCCTCTAGATCTTCTCAGCTGTCACGCACTAGAGCT
GCTAGAGATAGGTGATTGTTCTATCAACCTTTTGGGTATCTTTCCCAAATCTTTACGGCA
TCTGAAAATCAGAGATTCGTATCTTTATTCCATGCAAACACCATGGAGTTGCCTTTCTGC
TCCAGGTCTTCTTACCTTTGAACTAGCTGACCCTCATGACTGGGCCCCGTTCCTTGAGAG
CCTCCCGTCACTGGTAACATCATTTATCAGGATTGGCGAAGATTGTGCAGATAATTACGC
TTGTTATAATTACCTTAGGGATAGTGGTAACGAGTCATGTGAAGATGATTGTTGTGTACT
TCTTCAAGGATTGGCGGGTGCTACAAATTTAGAGCTGATAAGTGAATGTTCTATGGTATG
TTTGCTCTTTTAACTCCCTGTGTTGATTGCCATCCAACATTTTGCATCCCTGAGTCAATC
AAAGACTTGTAAAATATGTATTGTGTATCTCTCTATCTGCTCACAATTGATTACTTGAAA
TAAGAACTAAGGAAATCTTTTTCAACTCAGTGTTGTTGAATCATGTCTTCT

Homology of Contig U35_44072 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None