barSeed - Barley Seed Development Database

Probe CUST_4835_PI390587928

Source Contig U35_42468

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4835_PI390587928	Hv_44K_v2	CATTTTACAGTTATGGACATGCCTTGTTTTTCAAAGATCGGGAAGCGACCAATCCTTCAG	122	GeneList: cyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.210	1.448	1.450	0.847	0.677	0.603
Raw	22.979	20.389	19.762	16.298	3.483	3.352

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51296.4	1224	2e-24	113 - 172	100	60 / 60	plus	ABC38149
MLOC	MLOC_51296.2	1504	2e-24	1324 - 1383	100	60 / 60	plus	None
MLOC	MLOC_51296.1	1912	2e-24	1466 - 1525	100	60 / 60	plus	None
MLOC	MLOC_51296.3	2435	2e-24	1324 - 1383	100	60 / 60	plus	ABC38149
JLOC1	JLOC1_32758.3	1212	8e-25	133 - 192	100	60 / 60	plus
JLOC1	JLOC1_32758.2	2244	8e-25	1165 - 1224	100	60 / 60	plus
JLOC1	JLOC1_32758.1	2301	8e-25	1222 - 1281	100	60 / 60	plus
Harvest21	ABC38148	578	3e-25	123 - 182	100	60 / 60	plus
Harvest35	U35_42468	578	3e-25	123 - 182	100	60 / 60	plus

Contig Sequence (578 bp)

>U35_42468 578 Hv_44K_v2
GCGTAGATGGGCCTGACATATTTTATTGCGATGTATGTATTCCAATGAGCATCAAATAAA
GTCCAAGTGCTTGAGGGATAGGGTTCGGCATTATGGAGGACTTGCTCCGGAGTGTGCTAG
CACATTTTACAGTTATGGACATGCCTTGTTTTTCAAAGATCGGGAAGCGACCAATCCTTC
AGGGGCAAACTGGCATGGCAAAGATCATAAGGATGGGAAAATGACAGGCGACGAAGATGA
TTCTGATTTGGATTTGGCCTGGAAAATGTTGAATACTGCAAGGGTAATAGTTGCCAAGAG
TCCAGACAAGACAATGGAGAAGGTTAATATATTGAATCTTCTTGCTGAAATCTCCATGAG
AAGAGGCGACCGAGACAGCGCAATCGGTTACTACATCGAAGCTTTAGCGATCTTGGAGCA
TCTGGTTAGGCCTGACAATTTTCGAATTTTCGAGCAAAACGTCCGCATAAGTTTGGCCTT
CGAGTTAGCATCCAAGGTTGGGAATGCAATCCCATATTGTGCAAAGGCTATTTCAGTAGG
CAAGTCGCGTATGCATAATCTGATAAATGCCAAGGAAG

Homology of Contig U35_42468 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None