barSeed - Barley Seed Development Database

Probe CUST_4833_PI390587928

Source Contig U35_42469

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4833_PI390587928	Hv_44K_v2	GTCACTAGATATTCCTAGCATTAGCACCCAATAACCGATGGATTATCAGTGGCTCTCAAA	14	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51296.4	1224	3e-21	1149 - 1205	98	56 / 57	plus	ABC38149
MLOC	MLOC_51296.3	2435	3e-21	2360 - 2416	98	56 / 57	plus	ABC38149
Harvest21	ABC38149	564	3e-25	15 - 74	100	60 / 60	minus	ABC38149
Harvest35	U35_42469	564	3e-25	15 - 74	100	60 / 60	minus

Contig Sequence (564 bp)

>U35_42469 564 Hv_44K_v2
TTTTTTTTTTTTTTTTTGAGAGCCACTGATAATCCATCGGTTATTGGGTGCTAATGCTAG
GAATATCTAGTGACCAGATCAAATACTGAATGACAGAAACTTGTATCTCCCTACTTGCAT
ACAGTTCAACAGAATAAGCATTGATCATGAACAGACTAGTAAACATCTTGGGAGGACATT
CCAGGCATATCTTGGCAGTTTCAGATCTTCTAACTAGCTGCTATCACGTTTCATTCACGG
ATGGTGAATCATCTGCTGCAAGTCTCTTCGGAGAAGGTTCGTCCGAGATCGGCTTGTCAT
CATTAGCTCGTTTCATGTCTCTGCCAACAATCACAAGCTCAGTTACACTACCTCCAGTGC
TTCCTGTTGCTGCTGCTGCCGTAAACATAGTTGGGGAATGAAAGCTGTTGTTTGATCCAG
ACGTCTGTGAACAAGTCAAAGATGCAGCTCCTGCCACACCACGGCTAACATTCTGCTCAT
GACTTGTCACTGAGACCACCCGCTTCTTATTATGATCTATGCCATCGCTTGGGGTTGACA
TTGCTTGCTCCAGTTCTTCAAGCT

Homology of Contig U35_42469 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None