barSeed - Barley Seed Development Database

Probe CUST_481_PI415269222

Source Contig TA49213_4513

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_481_PI415269222	Hv_44K_v2	ACTGGTAGAAACAGGAAACTGGTGTGAAGTTACAATTTTGAGCAGGTTAGAGTTGTGTCC	950	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64467.1	2207	2e-24	1957 - 2016	100	60 / 60	plus	ABC18049
JLOC1	JLOC1_42335.1	1878	8e-25	1621 - 1680	100	60 / 60	plus
Harvest21	ABC18049	1026	3e-25	29 - 88	100	60 / 60	minus	ABC18049
Harvest35	U35_23036	1026	3e-25	939 - 998	100	60 / 60	plus

Contig Sequence (1013 bp)

>TA49213_4513 1013 Hv_44K_v2
TTCGGCACGAGGCAGCAGATGAGGAACAGGGNACATTGTTGTTTGGAACGCGATGATCTT
GGGGCTGGGCCTGACTGGGCATGGTAGGATTGGATTTGCCCTTGTCGGCAAGATGGAGAA
GTCAGGCATGAAACTGAATGACAACACTTTCATCAGCATTCTCTGCAGCTGTACCCATAC
CGGCCTTGTAAAAGATGGACGGCGGTATTTCCATAACATGACTCAGTTATACAACATCAC
GCCTAGGATTGAGCACTATGGTTGTATGGTCGACCTGCTCAGTCGCGCTGGGTTGCTCCA
GGAAGCCCATCAGCTTATTGATGATATGCCAATGCAGGCAAACGCTGTCGTGTGGGGAGC
ACTTCTTGGTGGCTGCAAGATTCACCGAGACGCTGAGCTTGCAGAACATGTCTTGAAGCA
GCTCATCCTGCTAGAGCCCCGGAATTCCGGAAATTATGTCATGCTCTCAAACATATACTC
TAACAGCAACAGATGGGAGGATGCTGCGAAGCTTAGATCGGACATGAAGGTGAAAGGGGT
TGAGAAAGCCCGTGCATATAGCTGGGTTGAGTTTAGTGGTAAGGTCCATGAGTTCCGTGT
TGGAGACAAGTCGCATCCCCAGATGGATCAGATTTACCAAAAGCTAGATGAATTAGGCAT
AGAAATGAAAACCATGGGTTACAAACCAACTACCGATGTGGTGATGTTCGACGTTGAAGA
TGAGGAGAAGGAGCACACTCTGGTTTATCACAGCGAGAAACTTGCCATTGCATTTTGCCT
TCTCAGTACCCAACCAGGGGAGGTCATTAGGGTCACCAAGAACCTTAGGGTTTGCACCGA
CTGTCACACTGCTATTAAACTAATATCAAGGATAACTCATCGGGAGATCATTGTTCGGGA
TAACAACCGATTTCATTGTTTTGAAGATGGTTGTTGCTCTTGTAATGACTACTGGTAGAA
ACAGGAAACTGGTGTGAAGTTACAATTTTGAGCAGGTTAGAGTTGTGTCCCTT

Homology of Contig TA49213_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g01836.1	646	0.0	protein\|pentatricopeptide, putative, expressed
Brachypodium v1_2	Bradi4g44707.1	650	0.0
Arabidopsis v10	AT3G08820.1	685	2e-130	Pentatricopeptide repeat (PPR) superfamily protein \| chr3:2677122-2679179 REVERSE LENGTH=685