barSeed - Barley Seed Development Database

Probe CUST_480_PI415269222

Source Contig TA33665_4513

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_480_PI415269222	Hv_44K_v2	AGATAACGAAGAGAAGGAACTAGTTGCGCAGCAGAACATGTACGCTCAATTGCTTCCTCT	2701	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57760.2	5712	2e-24	419 - 478	100	60 / 60	minus	ABC05231
MLOC	MLOC_57760.1	5874	2e-24	689 - 748	100	60 / 60	minus	ABC05231 ABC34895
JLOC1	JLOC1_37489.1	6029	8e-25	5246 - 5305	100	60 / 60	plus
Harvest21	ABC05231	2879	3e-25	2247 - 2306	100	60 / 60	plus	ABC05231
Harvest35	U35_1487	3376	3e-25	2700 - 2759	100	60 / 60	plus

Contig Sequence (2910 bp)

>TA33665_4513 2910 Hv_44K_v2
CATTTCAAATATATAGAATCAGCTGCAAGGACTGGACAGATTAAAGAAGTTGAGCGAGTC
ACAAGAGAGTCTAATTTTTACGATGCTGAGAAGACAAAGAACTTTCTGATGGAAGCAAAA
CTACCTGATGCCCGTCCACTCATAAATGTCTGCGACCGCTTTGGCTTTGTTCCAGATCTT
ACTCACTATCTGTACACAAACAATATGCTCCGATACATCGAAGGCTATGTACAGAAGGTA
AACCCTGGAAATGCTCCGTTGGTAGTGGGGCAGTTACTTGATGACGAGTGCCCGGAAGAT
TTCATTAAGGGTTTGATTTTGTCTGTTCGATCTCTTCTTCCTGTCGAGCCACTGGTTGAT
GAATGCGAGAAGAGGAACCGTCTACGTTTGCTGACACAATTCTTGGAGCACTTAGTGAGC
GAGGGTACCCAAGATGTGCATGTCCACAATGCTCTTGGGAAAATTATCATTGACAGCAAC
AACAATCCTGAGCATTTCCTTACTACCAACCCATTCTATGACTCCCGTGTGGTGGGTAAA
TACTGTGAAAAGAGGGATCCTACTCTTGCTGTTGTTGCTTACAGACGTGGACAGTGCGAT
GAAGAACTTATCAATGTTACCAACAAAAACTCGCTGTTCAAGCTGCAAGCTAGGTATGTG
GTTGAAAGAATGGACGGTGATCTGTGGGATAAAGTTCTACAGCCTGATAACGAATATAGA
AGGCAATTCATTGACCAAGTGGTTTCTACTGCATTGCCCGAAAGCAAGAGTCCTGAGCAA
GTTTCAGCTGCTGTTAAGGCTTTCATGACAGCTGACCTCCCTCATGAACTGATTGAACTT
CTTGAGAAGATTGTCCTTCAGAATTCCGCGTTCAGTGGAAACTTCAATCTTCAGAATCTG
CTCATCTTGACAGCCATCAAGGCGGACTCATCTAGGGTCATGGACTATGTTAACAGACTA
GACAACTTTGATGGTCCTGCCGTCGGAGAAGTTGCAGTTGAAGCACAACTTTATGAGGAG
GCTTTTGCCATATTCAAGAAGTTCAACTTAAATGTGCAGGCTGTCGATGTTCTGTTGGAT
AACATCCGAAGCATAGAAAGGGCGGAAGAGTTTGCATTCCGTGTTGAAGAAGATGCTGTC
TGGAGCCAGGTTGCCAAGGCCCAGTTGCGTGAAGGTTTAGTCAGCGAAGCAATCGAGTCC
TTCATTCGTGCCGATGATGTGACACATTTCCTTGATGTCATCCGTGCTGCTGAGGAAGCC
AATGTATACCATGATTTGGTCAAGTACCTTGCTGATGGTTAGGCAAAAGGCAAGGGGAGC
CCAAAGTTGACAGCGAACTCATCTTTGCATATGCTAAGATTGATAGACTCAATGACATTG
AAGAGTTTATTCTGATGCCGAATGTTGCCAATCTCCAAAATGTTGGTGACCGTCTGTATG
ACGAAGAACTCTATGAAGCTGCAAAGATCATCTATGCCTTCATTTCAAACTGGGCTAAGC
TGGCTGTCACCTTGGTCAAGCTGAAGCAGTTCCAAGGTGCTGTAGATGCTGCTCGCAAGG
CTAACAGCGCTAAAACATGGAAGGAGGTCTGCTTTGCTTGTGTTGATGCTGAGGAGTTCC
GTCTGGCACAAATCTGTGGTCTCAACATTATCGTTCAGGTTGATGACTTGGAGGAAGTGA
GTGAATACTACCAGAACAGAGGATGTTTCAGTGAACTTATTTCCCTCATGGAGAGTGGGC
TTGGACTTGAGCGGGCACACATGGGCATCTTTACTGAATTGGGAGTTCTCTATGCTAGAT
ACCGCCCTGAGAAGCTCATGGAACACATCAAACTCTTCTCCACCCGTCTCAACATTCCTA
AGCTCATCCGTGCTTGTGATGAACAACAGCACTGGAAAGAGCTTACATACCTATACATTC
AGTATGATGAATTTGACAATGCTGCTACCACTATCATGAACCATTCTCCAGATGCATGGG
ATCACATGCAATTTAAGGATGTTTGTGTTAAAGTTGCAAATGTTGAGATTTATTACAAGG
CTGTGCATTTCTATTTGCAAGAGCACCCTGATCTCATCAATGATCTTCTCAATGTGCTTG
CACTTCGTTTGGATCATACCAGAGTTGTAGATATAATGCGCAAGGCTGGTCAGTTGCATC
TTGTGAAACCATACATGGTTGCAGTTCAGAGCAACAATGTCTCTGCCGTCAATGAAGCTT
TGAATGAGCTTTATGTCGAAGAGGAAGACTACGAGAGGCTCCGTGAATCTGTTGACATGC
ATGATAACTTTGATCAGATAGGTCTTGCTCAGAAGCTTGAGAAGCATGAGTTGCTTGAGA
TGAGAAGGATTGCTGCCTACATTTACAAGAAGGCTGGCAGATGGAAGCAATCTATTGCCC
TCTCGAAGAAAGACAACATGTACAAGGATTGCATGGAGACATGCTCACAGTCTGGTGACC
GTGAGCTCTCAGAGGACTTGCTTGTCTATTTCATCGAACAGGGAAAGAAAGAATGTTTTG
CTTCTTGCCTCTTCATTTGCTACGACTTGATTCGTGCGGATGTTGCTCTTGAGCTTGCAT
GGACGAATAACATGCTGGATTTCGCGTTCCCCTATCTATTACAGTTCATCCGTGAGTACA
CAAGCAAGGTAGATGATTTGGTGAAGGACAGGATAGAATCGCAGAAGGAAGAGAAAGCTA
AAGATAACGAAGAGAAGGAACTAGTTGCGCAGCAGAACATGTACGCTCAATTGCTTCCTC
TGGCCTTGCCTGCTCCGCCTGGTATGATGGGCGGTCCCGCACCTCCGATGGGCGGAATGG
GCATGCCGTCAATGGGCGGGATGGGTATGCCTNCGATGGGTCCCGTCCAATGCAGCATAC
AGGATGCCTNCAATGGGAAGCTCTGAGTAA

Homology of Contig TA33665_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os11g01380.1	1709	protein\|clathrin heavy chain, putative, expressed
Brachypodium v1_2	Bradi4g44977.1	1711
Arabidopsis v10	AT3G08530.1	1703	Clathrin, heavy chain \| chr3:2587171-2595411 REVERSE LENGTH=1703