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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_4808_PI390587928Hv_44K_v2AGTTAAAATTTCCCTCAGCTAAAGTCACCCACCTTGGAAACTGGTTCACAGTTGACAGCA500GeneList: darkred
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.8571.7752.9731.3290.3800.333
Raw 21.12764.09198.64063.2607.0056.542



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK37588328412e-24959 - 101810060 / 60plus ABC20555
MLOCMLOC_34763.516472e-24718 - 77710060 / 60plus None
MLOCMLOC_34763.412202e-24732 - 79110060 / 60plus None
MLOCMLOC_34763.124672e-24752 - 81110060 / 60plus None
JLOC1JLOC1_22451.119868e-25732 - 79110060 / 60plus
Harvest21ABC381605993e-25501 - 56010060 / 60plus
Harvest35U35_424785993e-25501 - 56010060 / 60plus



Contig Sequence (599 bp)

>U35_42478 599 Hv_44K_v2
GCTGGTCTTCATTGGTATTTGAAGCACTATTGTGCAGCACATATATCATGGGCTAAAACT
GGTGGTGCACAATTATCGTCTGTTCCATATCCTGGCTCACTACCTCGTGTTCCTGCTGGT
GGCATTTTGATTCAAAGACCTGTTGACTGGAGCTACTACCAGAATGCAGTTACATCCAGT
TATTCTTTTGCTTGGTGGGATTGGGAGCGCTGGGAGAAGGAGATTGATTGGATGGCTCTT
CAAGGAATCAATTTGCCTCTAGCTTTCACTGGGCAAGAGACTATATGGCAGAAGGTTTTT
CAGAGGTACAACATTAGTAAATCTGATTTGGACGATTTCTTTGGTGGACCGGCCTTTCTT
TCATGGTCTCGGATGGCCAATATGCATGGATGGGGTGGGCCTCTTCCTCAGACTTGGCTT
GATGATCAATTAACTCTTCAGAAGAAAATCCTCTCTAGGATTTCTTCCAGCCTTTTCTGG
TAACATCCCTGCTGCACTGAAGTTAAAATTTCCCTCAGCTAAAGTCACCCACCTTGGAAA
CTGGTTCACAGTTGACAGCAACCCACGGTGGTGTTGCACATATCTTCTTGATGCATCCG



Homology of Contig U35_42478 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os04g55730.17975e-110protein|alpha-N-acetylglucosaminidase, putative, expressed
Brachypodium v1_2Bradi5g24207.18309e-112
Arabidopsis v10AT5G13690.18066e-85| Symbols: CYL1, NAGLU | alpha-N-acetylglucosaminidase family / NAGLU family | chr5:4415808-4420159 FORWARD LENGTH=806