- Probe CUST_4802_PI390587928
- Source Contig U35_28189
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_4802_PI390587928 | Hv_44K_v2 | TGATCCTAGCAAACACATTGAAGCACATTTGCCTGTTCGTGTGAACGAACAGAGGCTAAG | 494 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK364495 | 3911 | 2e-24 | 1487 - 1546 | 100 | 60 / 60 | plus | ABC14139 |
| MLOC | MLOC_79741.10 | 1888 | 2e-24 | 841 - 900 | 100 | 60 / 60 | plus | ABC14139 |
| MLOC | MLOC_79741.8 | 2230 | 2e-24 | 1398 - 1457 | 100 | 60 / 60 | plus | ABC14139 |
| MLOC | MLOC_79741.7 | 2092 | 2e-24 | 1398 - 1457 | 100 | 60 / 60 | plus | ABC14139 |
| MLOC | MLOC_79741.1 | 2530 | 2e-24 | 1460 - 1519 | 100 | 60 / 60 | plus | ABC14139 |
| MLOC | MLOC_79741.2 | 2668 | 2e-24 | 1460 - 1519 | 100 | 60 / 60 | plus | ABC14139 |
| MLOC | MLOC_79741.5 | 2558 | 2e-24 | 1505 - 1564 | 100 | 60 / 60 | plus | ABC14139 |
| MLOC | MLOC_79741.6 | 2696 | 2e-24 | 1505 - 1564 | 100 | 60 / 60 | plus | ABC14139 |
| MLOC | MLOC_79741.3 | 2757 | 2e-24 | 1542 - 1601 | 100 | 60 / 60 | plus | ABC14139 |
| MLOC | MLOC_79741.4 | 2619 | 2e-24 | 1542 - 1601 | 100 | 60 / 60 | plus | ABC14139 |
| JLOC1 | JLOC1_53105.5 | 2044 | 8e-25 | 1364 - 1423 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_53105.4 | 2607 | 8e-25 | 1382 - 1441 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_53105.3 | 2485 | 8e-25 | 1398 - 1457 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_53105.2 | 2677 | 8e-25 | 1452 - 1511 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_53105.1 | 2539 | 8e-25 | 1452 - 1511 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC26908 | 623 | 3e-25 | 495 - 554 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_28189 | 623 | 3e-25 | 495 - 554 | 100 | 60 / 60 | plus |
Contig Sequence (623 bp)
>U35_28189 623 Hv_44K_v2 TGAGACATTGGACCGTAGAAAGGATTTGTTTTCTGTCCCTCCACATATATATTTGCAGCC ATCGTGCCTGCTTTGATGGTCGCAGGACTTTATTTCTTTGACCACAGTGTAGCTTCACAG TTGGCTCAGCAGAAGGAGTTTAATTTGAAGAAGGCTTCTGCCTACCATTATGACATTTTG GTACTTGGATTCATGGTCCTACTATGTGGTTTGCTTGGCATTCCCCCATCAAATGGAGTA CTTCCTCAGTCCCCCATGCATACAAGAAGCCTTGCTGTCCTCAAGGGGCAGCTGCTACGC AGAAAGATGCTTCAAACTGCCAAAGAGGGCATGTCAAACCGTGCGAGCAGTTTGGAAATC TATGGCAAGATGCAGGAAGTGTTCATCCAAATGGATAGCAACCAGAATGCTAATTCTGTT GACAAGGACTTGAAGAGCTTGAAGGATGCTGTGCTGCGGGAAGGTGACGAAGAAGGGAAA TTGGCTGGAGAATTTGATCCTAGCAAACACATTGAAGCACATTTGCCTGTTCGTGTGAAC GAACAGAGGCTAAGCAACCTGCTGCAATCCTTACTTGTTGGTGGCTGTGTTGGAGCTATG CCGGCTATCAAGATGATACCGAC
Homology of Contig U35_28189 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g08020.1 | 673 | 1e-110 | protein|boron transporter protein, putative, expressed |
| Brachypodium v1_2 | Bradi2g04690.2 | 525 | 9e-121 | |
| Arabidopsis v10 | AT1G15460.1 | 683 | 2e-85 | | Symbols: ATBOR4, BOR4 | HCO3- transporter family | chr1:5310196-5313376 REVERSE LENGTH=683 |