barSeed - Barley Seed Development Database

Probe CUST_47_PI390587928

Source Contig U35_7824

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_47_PI390587928	Hv_44K_v2	GGAGGAGTCGTCCCTTTAAACTAGACTTTCGTAAGTTTGTGTATTATGTTTGGAACAGTT	1264	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.733	1.656	0.971	0.933	0.396	0.434
Raw	3328.660	5077.500	2595.070	4082.230	561.032	685.362

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52316.1	3615	2e-24	3471 - 3530	100	60 / 60	plus	ABC15376
JLOC1	JLOC1_33513.1	3667	8e-25	3504 - 3563	100	60 / 60	plus
Harvest21	ABC15376	1364	3e-25	1265 - 1324	100	60 / 60	plus	ABC15376
Harvest35	U35_7824	1364	3e-25	1265 - 1324	100	60 / 60	plus

Contig Sequence (1364 bp)

>U35_7824 1364 Hv_44K_v2
GGAGGACGTGCGTGTGATGACCCGCAAGAGCGTCGACGACCCCGGCCGCCCACCGGGTAT
CATCCTCAACGCTGCCACCTCCTTCTGGCTCCCCGTCCCTCCCTCCCGCGTCTTCGGCTT
CCTGCGCGACGATTCCACCCGCAGCGAATGGGACATCCTCTCCAACGGCGGCGTCGTCCA
GGAGATGGCCCACATCGCCAACGGCAGCCACCACGGCAACGCTGTCTCCCTCCTCCGCGT
CAACAACGCGAACTCGAACCAGAGCAACATGCTGATCCTGCAGGAATGCTGCACGGACGC
GACGGGGTCGTATGTGGTGTACGCGCCGGTGGACGTGGTGGCCATGAACGTGGTGCTCAA
CGGCGGGGACCCGGACTACGTGGCGCTGCTGCCGTCCGGGTTCGCCATCCTTCCTGACGG
GCCGGCCGGGTCCCCGGATGCTGGCGGGTCGCTCCTCACCGTCGCCTTCCAGATCCTCGT
CGACTCCGTGCCTACAGCCAAGCTCTCGCTGGGATCCGTCGCCACCGTCAACAGTCTCAT
CGCATGCACCGTCGACCGCATCAAGGCTGCAGTTGTCGTCAGCGCCGGTGACAACGCTGG
CGTCGCCGCCCGGTGACCGCCATCCATCATCGTGGGCAATGGAGATCAAGAGGGACCAAG
AGCGGGTCCGGAGGTTTAGCAATGTGGGAAGTCAAGAACGCACCGCAGACTCTCCTTGCC
AAGTGTTGTTTGCATTGCATGCATAATCCCCTTTCTCTCTTCTTCCCATGCATAATCCCC
TCTCTTCTTCCCATTCATAATCCATTCACCACCAGCACCACCACCACCACAACACCATTA
CAGCAAGATGAAGGGACCAACCATGGAGGAACACAACCTAGGTCCTATGATCATGGCTGC
AGATAAATGCACGCATTGACATGTCATAGGCTCTGAGTTGTGTTTCTTAGTTAACTAATC
CCAGCTCATCTACATATTTACATGTTTGTGTTTGCTTCATAGTAGAAGACAAGCACAAAC
CCTTTCTTCTTAATTAAATGATCATTTGCATGCCATGACACAAATTCAGAAGCAAGCAAG
CAGGCAACACTTTGCAAGGGCGGTTGGTTCGGGTATTGACTTCTCTTTTAGTTTTCTGTC
TCTGGGTTGCCAGTCCCTCTCCAGAATGATCATCCAGGATTAATGTGCCATCAGCTAGAC
TTTTTAGTTTGGTTAATTACATTGCCATGTGTTTTGTTGTGTAGTGCTCCGTCCATTTCT
GCATGGAGGAGTCGTCCCTTTAAACTAGACTTTCGTAAGTTTGTGTATTATGTTTGGAAC
AGTTTAATTTGGAACTACCTTTTGCATCAAAAAAAAAAAAAAAA

Homology of Contig U35_7824 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g04190.1	750	1e-104	protein\|homeobox and START domains containing protein, putative, expressed
Brachypodium v1_2	Bradi3g14500.1	827	1e-95
Arabidopsis v10	AT1G05230.1	721	1e-91	\| Symbols: HDG2 \| homeodomain GLABROUS 2 \| chr1:1513388-1517024 REVERSE LENGTH=721