barSeed - Barley Seed Development Database

Probe CUST_4790_PI390587928

Source Contig U35_42489

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4790_PI390587928	Hv_44K_v2	GTGGGCATTTTCATTCTGTTGGATCACTGTAACTAATTTGTTGCATCATTGTATGTTGTG	435	GeneList: skyblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.744	0.589	1.391	1.297	1.055	0.865
Raw	4.116	4.260	13.183	18.697	4.618	3.205

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC01286	1295	3e-25	1143 - 1202	100	60 / 60	plus
Harvest35	U35_42489	588	3e-25	436 - 495	100	60 / 60	plus

Contig Sequence (588 bp)

>U35_42489 588 Hv_44K_v2
GGAAGAAGTATGGGCAGGATGCCACCAATGTCGGAGATGAAGGTGGTTTTGCTCCTAACA
TTCAGGAGAACAAGGAGGGCCTTGAGCTCTTGAAGACTGCAATTGAAAAGGCTGGATACA
CCGGCAAGGTTGTCATTGGAATGGATGTCGCTGCTTCAGAGTTCTACAATGACAAGGACA
AAACCTATGACCTCAACTTCAAGGAGGAGAACAACGATGGTTCGCAGAAGATATCTGGAG
ATAGCCTGAAGAACGTGTACAAGTCATTTGTGAGCGAGTACCCCATTGTGTCGATTGAGG
ACCCATTTGACCAGGATGACTGGGTTCACTATGCTAAGATGACTGAGGAATGCGGAGAGC
AAGTTCAGATTGTTGGTGATGACCTTCTAGTCACCAACCCAACCGTGAGTGATTGATTTG
TGTTCTGTTGTGTAGGTGGGCATTTTCATTCTGTTGGATCACTGTAACTAATTTGTTGCA
TCATTGTATGTTGTGCAGAGAGTTGCGAAGGCAATCCAGGAGAAGTCATGCAATGCTCTT
CTGCTGAAGGTTAACCAAATTGGATCCGTCACTGAGAGTATCGAGGCC

Homology of Contig U35_42489 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g08550.5	424	2e-87	protein\|enolase, putative, expressed
Brachypodium v1_2	Bradi3g22550.2	447	2e-88
Arabidopsis v10	AT2G36530.1	444	3e-80	\| Symbols: LOS2, ENO2 \| Enolase \| chr2:15321081-15323786 REVERSE LENGTH=444