barSeed - Barley Seed Development Database

Probe CUST_4789_PI390587928

Source Contig U35_28196

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4789_PI390587928	Hv_44K_v2	AATCAAAATGGAGGTTGCAGTTCATATACTTGTCGTTTGGCTGAGCAGGAGAAGGGGAAC	405	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66289.2	3896	2e-24	2817 - 2876	100	60 / 60	minus	ABC03694 ABC07678 ABC39688
JLOC1	JLOC1_43666.2	3892	8e-25	2867 - 2926	100	60 / 60	minus
Harvest21	ABC26923	604	3e-25	406 - 465	100	60 / 60	plus
Harvest35	U35_28196	604	3e-25	406 - 465	100	60 / 60	plus

Contig Sequence (604 bp)

>U35_28196 604 Hv_44K_v2
GCCCAGCAGCAGCGGCGCATGCCGCAGCTCCCCAAGATCGAGGACGACGGCAACCCCCGC
TTCGTCATCTTCATCCGCACCGCCAATGTGTACTTTTGGTACCCGCTCAACATCGTCACC
GGCGGCACCACCGCCAAGATCATGCTCGCTGCCAAGGACAACTTCCTCGGCAAGTACATC
TACAAGGACACGCTCGCCCGGAACCTCGCCACCGTCATTTACAAAGACGAGGATGACATA
ATTGACCTGGCGAAAGAGCAGTTCCGCGTGCTCAAGGGAGAAACCGAGTTCCGGTACGGC
TACAAGATCGTGGTAATTCTCTCATCCTTGGCTGCAGGACAGGAGGGAGGGCGCGTCGTT
TCGATAATCATATCTTCTACTGGTTGTACTAGCCTTTCATTCAAAAATCAAAATGGAGGT
TGCAGTTCATATACTTGTCGTTTGGCTGAGCAGGAGAAGGGGAACCTCAGGTCTGCGCTG
GCGACAAGCAACGTGCTCGAGCTCCCAAAGAAAGAAGAGCTCAAAAGTGTAGTTGACAAG
GTGAGGGACTTCTTCGGTGAGGTAACCTCGGGCGCCAAAGAATCCTTTGCACAGATAACA
GGAT

Homology of Contig U35_28196 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g38820.1	265	4e-86	protein\|expressed protein
Brachypodium v1_2	Bradi3g47890.6	248	5e-92
Arabidopsis v10	None