barSeed - Barley Seed Development Database

Probe CUST_4783_PI390587928

Source Contig U35_42495

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4783_PI390587928	Hv_44K_v2	TCTCATCGCATGGCTGGACCAGAAGCCACGCGGTTCCGTGGTGTTCCTGTCATTCGGGAG	49	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38148.1	1491	2e-24	901 - 960	100	60 / 60	minus	ABC38185
MLOC	MLOC_38148.2	1794	2e-24	823 - 882	100	60 / 60	minus	ABC38185
MLOC	MLOC_38148.3	1799	2e-24	828 - 887	100	60 / 60	minus	ABC38185
Harvest21	ABC38184	408	3e-25	50 - 109	100	60 / 60	plus
Harvest35	U35_42495	408	3e-25	50 - 109	100	60 / 60	plus

Contig Sequence (408 bp)

>U35_42495 408 Hv_44K_v2
GGGTCTGGACACGGCCGTTCGGCGTGAACCGGGAGCCGGAGCACGCACGTCTCATCGCAT
GGCTGGACCAGAAGCCACGCGGTTCCGTGGTGTTCCTGTCATTCGGGAGCGGCGGCACGC
TCACGCGGCGGCAGACGACCGAGCTAGCGCTCGCGCTGGAGGCGACGGGGCGTCCGTTCG
TCTGGGCGGCGAAGAGGCCACACGAGAACACGGCAGACGGCGCCTTCTTCGGGACCGGAC
GACGAGGAGACGACGACGACGACCCGCTCGGCTTCCTGCCGAGGGGCTTCGTCGAGAGGA
CGTCGGGGGCGGGGCTCGTCCTCTTGTCGTGGGCACCGCACACGGNGATCCTCGCGCACG
CCGCCGTCGGCTGCTTCGTGACGCACTGCGGGTGGAACTCGAGCCTGG

Homology of Contig U35_42495 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None