barSeed - Barley Seed Development Database

Probe CUST_4782_PI390587928

Source Contig U35_42496

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4782_PI390587928	Hv_44K_v2	GTATGCCTCTAGCATCCCTTATCTGATGATTATGCCATTACGAAAGTTCCAAGCAAAAAA	11	GeneList: yellowgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.714	2.120	1.583	1.099	0.338	0.373
Raw	96.666	448.806	284.286	319.446	33.715	39.736

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC38185	577	3e-25	12 - 71	100	60 / 60	minus	ABC38185
Harvest35	U35_42496	577	3e-25	12 - 71	100	60 / 60	minus

Contig Sequence (577 bp)

>U35_42496 577 Hv_44K_v2
TTTTTTTTTTTTTTTTTGCTTGGAACTTTCGTAATGGCATAATCATCAGATAAGGGATGC
TAGAGGCATACAGATCTTACATAGACAAGTGCACAACTATATCCATGCTAATTTGTTGAC
GATGACTGCTACATCAAGATGATGTACTCGTCGAGCTCGATAGCTTTGGCATGTGGTTCC
GCATGTTCCTCGTCAATGACGTCCATGGAGGGTGCCTGCAGCTCTCTTTATTTTCCCTCA
CTAGGAGTAGTAGAAGATTTCCACACATCCGTGACCTTGGCTAGTGTAAGAGTTGAAGAA
CCATGCATTGTCAGCGCATGCGTGGCCCTGTCTCTGAGCTCACCAACACGCCTCCTCATC
GTCGTCGCTTCGTCGCCATCCATCACGCGTCGGATCACGCTCACAATCTCTTCCTTGCAC
ACAAAGCCGGCGGCGTTAACGCGGGCCGCCACCCCTGCGTGCGCCTCCAGCATGTGCGGC
GTTCATCTTCTGCTCGGCGTAGAGCGGCCATGCCACCATCGGCACCCCGNTTGAGGATGC
TCTCCAGGCTCGAGTTCCACCCGCAGTGCGTCACGAA

Homology of Contig U35_42496 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None