barSeed - Barley Seed Development Database

Probe CUST_4774_PI390587928

Source Contig U35_4050

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4774_PI390587928	Hv_44K_v2	TCACATACACCCTTTTCTGTGTCAATTGTAGTTCTATCGATAAATTTTGTGCCGTTTCAA	967	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.751	3.283	1.186	0.771	0.458	0.309
Raw	114.371	132.808	39.327	43.447	7.541	5.343

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75003.2	1527	2e-24	1466 - 1525	100	60 / 60	plus	ABC09878
JLOC1	JLOC1_50007.1	1246	8e-25	1020 - 1079	100	60 / 60	plus
Harvest21	ABC09878	1108	3e-25	968 - 1027	100	60 / 60	plus	ABC09878
Harvest35	U35_4050	1108	3e-25	968 - 1027	100	60 / 60	plus

Contig Sequence (1108 bp)

>U35_4050 1108 Hv_44K_v2
CAGCTCCAGGAGAACAAAAATTTCTGTAACAAAGAAAAGAGCAGAGAGAATCAAGAAGCA
GAAATGGCAGTTCTTGGTCTATCTACTGCCTTCTCTCCCCCAAGAGGTTCTTGGATAGCT
GTGAGGCTCAGGAATGGCGCCGCCGGGCGGAGTAGCGGGGGCCTGTCCCTTAGGAGGTCC
GCCGCCGCCGCCGTCGCCGTCCGCGCGGAGGTGAGCTTCGTGGACGGCGACGAAGCGAAG
CGGCTGGTGGCGGAGGAGGGGTACACGGTGCTGGACGTCCGGGACCGGCGGCAGTACGAG
AGGGCGCACGTCAGGGCCTCCGCCCACGTCCCGCTCTACATCGAGAACGAGGACAACGAC
ATTGGAACGATCATCAAGCGGCAAGCGCACAACAACTTCGCCGGCCTCTTCTACGGCCTG
TCCTTCACCAAGCTCAACCGGGACTTCACCAAGACGGTGAGGAGCAAGTTCTCGCCGGAG
AGCAAGCTGCTGGTCGTCTGCCAGGAAGGCCTCAGGTCCACAGCGGCTGCAGATGCATTG
GAGCGAGAGGGCTTCCAGAACCTGGCCTGCATCACCTCGGGTCTTCAGACATTGAAACCA
GGAACGTTCGAGACCGTCGGCGAAGCCGAGCTGCAGAATGCGGGGAAAGCCGGCCTTGTG
ACCATCCAGGGGAAGATCTCCATAGTTCTTGGGACTGTCTTGATAACTTTGTTGTTGCTC
ATAACAGTGTTCCCGGACCAGGCTGAGCAGATCTTCGAGTTGGCTGGCATCAAATTGTGA
TTAGAATCGCTGCTCTTCTAGTTACTCTCTTGAGTTCATATTTTTCACTGTCAGGTTAAG
TGTATCAGTAGGTGTACTTGGTGGGATATCTTCAGACTGAAAAAGGATGTTAGGCTCCAT
GTGTAATATTTAGGGACTTTCTGAAAATTCTACTACTTTGTATTTTGGCTCAAGTAATTT
GTTTTTCTCACATACACCCTTTTCTGTGTCAATTGTAGTTCTATCGATAAATTTTGTGCC
GTTTCAAGTAAAAAGAAGAATTGTGTTCAACTCATCGATTTTGAGTTATTTAAATTAGAT
GCCAGACCTCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_4050 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g10750.1	240	6e-104	protein\|rhodanese-like, putative, expressed
Brachypodium v1_2	Bradi4g27040.1	239	6e-116
Arabidopsis v10	AT2G42220.1	234	4e-79	Rhodanese/Cell cycle control phosphatase superfamily protein \| chr2:17592105-17593305 FORWARD LENGTH=234