barSeed - Barley Seed Development Database

Probe CUST_476_PI390587928

Source Contig U35_6928

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_476_PI390587928	Hv_44K_v2	GTCTAATCTTGGTTGCTGGGTCCTGTATCTCTTCGTTTCTATTTCCTTCACTCCAAAAAA	1261	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55942.2	1745	2e-23	1620 - 1677	100	58 / 58	plus	ABC17609
MLOC	MLOC_55942.1	1410	2e-23	1223 - 1280	100	58 / 58	plus	ABC17609
JLOC1	JLOC1_36128.2	1301	1e-23	1146 - 1203	100	58 / 58	plus
JLOC1	JLOC1_36128.1	1405	1e-23	1250 - 1307	100	58 / 58	plus
Harvest21	ABC17609	1321	3e-25	12 - 71	100	60 / 60	minus	ABC17609
Harvest35	U35_6928	1332	3e-25	1262 - 1321	100	60 / 60	plus

Contig Sequence (1332 bp)

>U35_6928 1332 Hv_44K_v2
GCGTCTGAGAGATCGGCGCACGGCGCCCCGTATAACAAACCAGTCGCACGCTCGCTCGCT
CGCTCGTCATGAATTTCAGCGGCCATTCCACGACCGCCCAGAGAAGACGCGCCTCCTCCC
TCTCCTCCGTCCTCGTCGTCTCCCCTCTCGCGCTTCCCCCCAACCCAGCCAACACGTTGA
CACGCAGACACGCTTCGCCGGGCGCGAGCGGCATCGGCGAGCCATGAAGGGCGGCGGAGC
CATCCGGAGCGGCGGCGGCGGCGGCGGGCTGATGCGGACGCGGCTGCGGCTCCCCGTGGT
GCTCCTCTCCTGCTCCCTCTTCTTCCTCGCCGGCTTCCTCGGCTCCCTCCTCTTCACCCA
GGATCCGCAGGGCGAGGAGGACCCGGAGCGGCCACTGCGGAGGGAGCGGGTCATGGAGGC
CGTCTGGCCGGAGATGGCGTACGGGGAGTCCGGCGACCCCGCGCCCTCCTTGATCCCTTA
CCAGATTTTGAGCTGGCAACCTCGTGCATTATATTTTCCACAGTTTGCAACAGCAGAACA
GTGTGAGAATGTAGTAAAAACTGCAAAGGCACGGCTTAGGCCATCAACATTGGCCTTAAG
GAAAGGAGAAAGCGAGGAGACTACCAAAGGAATAAGGACAAGCTCAGGCACATTCCTTAG
TGCCGAAGAAGATCCAACTGGAGCCCTTGCAGAAATTGAAACGAAGATTGCAAAGGCTAC
CATGATGCCGAGAAGTCATGGAGAGCCCTTTAATGTCCTTCGGTATGAGATTGGACAGAA
GTATGCTTCACACTATGATGCGTTCGACCCGGCTCAGTATGGTCCACAAAAAAGCCAAAG
AGTGGCATCTTTCTTGCTCTATCTCACGGATGTCGAAGAAGGTGGAGAAACCATGTTCCC
TTATGAGAATGGGGATAATATGAACATAGGCTACGACTACGAACAGTGCATCGGCTTAAA
AGTAAAACCGAGGAAGGGTGATGGCCTCTTGTTTTACTCCCTTATGGTAAACGGTACCAT
TGATCCGACTTCACTTCATGGAAGCTGCCCAGTGGTCAGAGGAGAGAAATGGGTCGCCAC
AAAATGGATTAGAGACAAGTCGGTGTAAAATCGGTGTAAATGAGGCTAACAAACAGAAGC
TCCACGTCCTAAATACTCCTAGATCCACACATACATAGTAATCATTTTTTCTACACGATC
ATGTACCTGTACATTACATTTATTCGATTTGCAACTATCTGCTAATTTGACAGGCGTGTT
AGTCTAATCTTGGTTGCTGGGTCCTGTATCTCTTCGTTTCTATTTCCTTCACTCCAAAAA
AAAAAAAAAAAA

Homology of Contig U35_6928 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g55380.1	311	1e-160	protein\|oxidoreductase, putative, expressed
Brachypodium v1_2	Bradi1g07820.1	209	5e-139
Arabidopsis v10	AT4G33910.1	288	1e-118	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein \| chr4:16256943-16258614 REVERSE LENGTH=288