barSeed - Barley Seed Development Database

Probe CUST_4765_PI390587928

Source Contig U35_4059

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4765_PI390587928	Hv_44K_v2	ACCTCTCCTAGTATTAGTGAGCAAATCAATGGACGATGTGCTTCTTGCTTGGTCAAAAAA	1469	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.512	2.353	1.265	0.754	0.254	0.260
Raw	350.780	841.309	400.079	369.889	44.784	50.184

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12117.3	1926	9e-22	1249 - 1303	100	55 / 55	plus	ABC09756 ABC12625
MLOC	MLOC_12117.1	2515	9e-22	1595 - 1649	100	55 / 55	plus	ABC05016 ABC05017 ABC09756 ABC12625
JLOC1	JLOC1_8112.1	2065	5e-22	739 - 793	100	55 / 55	minus
JLOC1	JLOC1_8111.1	2515	5e-22	1610 - 1664	100	55 / 55	plus
Harvest21	ABC09756	1535	3e-25	1470 - 1529	100	60 / 60	plus	ABC09756
Harvest35	U35_4059	1535	3e-25	1470 - 1529	100	60 / 60	plus

Contig Sequence (1535 bp)

>U35_4059 1535 Hv_44K_v2
GAGAGGAGGGGGGCAACGCAGCAACCAACGGGGGAAGGGGAAGGGCGAGGAAGACCGCGT
CGTGTTCCTCGTCCCGTCTCCTCTCCTCTCCACCCCCTTCGCGTTGCTTCTGACTTCCGA
TTAGATCAAGAAAACGAGGAAGGAAAGGAAGCGATGGGGTGCTTTTCATGCTGCGGTGCC
AGTGATGTTGGCAAGAAGAAGAAGCGCGATGATCCTTATGTTCCGGTCCCTGCCCCAGGG
GGTAACTATGGTTATAACCGGGGGTCAGTGCCAACCCATGCCATCCGTACCAGCAGAAGC
CAGCCAATTGAAGTACCAGCCATTCCCCTAGACGAAATTAAGGAAATAACCAAGAATTTC
AGCAGTGATGCTCTTATAGGAGAGGGTTCATACGCAAGAGTTTTCCTTGGTGTACTGAAG
GATGGCAAGAATTCTGCAGTGAAGAGGCTTGACTCCAGCAAACAGCCTGACCAAGAATTC
CTTGTGCAGGTATCGGCCGTTTCAAGACTCAAGCATGACAATGTTATCCAACTTCTCGGG
TACTGTGCTTTAGGGAGCACCCGTATTCTTGCTTATGAGTATGCAACAAGGGGCTCCTTG
CATGATGTTCTCCATGGTAAAAAGGGTGTCAAGGGATCCCAACCAGGACCAATCCTATCA
TGGATGCAGCGGGCGAGGATCGCTGTCTACGCTGCGAGAGGGCTCGAATTCCTCCACGAG
AAGGCAGAGCCACGTGTCGTCCACCGTGATATCAAGTCCAGCAACATACTGCTCTTTGAC
AACGATGTTGCAAAAATAGGAGATTTCGATGTGTCGAATCAGGCCCCTGACATGGCTGCA
CGCCTTCATTCTACACGTGTTCTTGGCACCTTTGGTTATCATGCTCCTGAGTATGCAATG
ACTGGGCAGCTAAGTGCAAAGAGCGATGTATACAGCTTTGGAGTGGTGTTGTTGGAGCTT
TTAACTGGCCGCAAACCAGTTGATCATACACTACCTCGTGGCCAGCAGAGCCTTGTGACA
TGGGCTACACCAAGGCTAAGTGAAGACAAGGTGAGGCAGTGTGTAGATCCAAAGCTTGGT
GTGGATTACCCTCCAAAGGCTATCGCCAAGATGGCTGCCGTGGCTGCTCTGTGCGTGCAG
TACGAGGCGGACTTCCGGCCAAACATGAGCATCGTCGTCAAGGCTCTGGCTCCGCTGCTG
CACACTCGGTCAAGCAACCGACCTGCCGGCTCAGCCTCCGCCGTCGAGTGATCTCCAACC
GGCTGCATGCGCGCGCAGGTGATTTTGCCGATTGCGATGATCTGGTGATGCTTACGGCGG
TTTTGCCCTGGATTTTGTGGGGTGGCGTTGTACATGTGTGGTAAAGTGAGGTGAGGTTTG
GTGTGATCTCATTTTCTTTCTCCCTTGGCGGGGGCTCGCGCTGTTTGTTGTACATTGGCC
CCTGCATTGCTTCGTCTGGTGGCCTCTCGACCTCTCCTAGTATTAGTGAGCAAATCAATG
GACGATGTGCTTCTTGCTTGGTCAAAAAAAAAAAA

Homology of Contig U35_4059 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g21970.1	372	0.0	protein\|protein kinase, putative, expressed
Brachypodium v1_2	Bradi2g12130.1	366	0.0
Arabidopsis v10	AT3G17410.1	364	1e-172	Protein kinase superfamily protein \| chr3:5956601-5958882 FORWARD LENGTH=364