barSeed - Barley Seed Development Database

Probe CUST_4763_PI390587928

Source Contig U35_4061

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4763_PI390587928	Hv_44K_v2	CCCTTCGTTTCTCCTAACCTAAAACGTATTAGGTTAAAGACCTGCCAAGAATTATTTTTA	1282	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251223.1	2235	2e-24	2150 - 2209	100	60 / 60	plus	ABC09899 ABC44480
MLOC	MLOC_20897.1	2166	2e-24	2045 - 2104	100	60 / 60	plus	ABC09899 ABC44480
JLOC1	JLOC1_14487.2	2215	8e-25	2055 - 2114	100	60 / 60	plus
JLOC1	JLOC1_14487.1	1784	8e-25	1624 - 1683	100	60 / 60	plus
Harvest21	ABC09899	860	3e-25	758 - 817	100	60 / 60	plus	ABC09899
Harvest21	ABC44480	382	6e-22	45 - 104	97	58 / 60	minus	ABC44480
Harvest35	U35_4061	1385	3e-25	1283 - 1342	100	60 / 60	plus

Contig Sequence (1385 bp)

>U35_4061 1385 Hv_44K_v2
CACGCGTCCGGCACATTCCGATTTTGCTGGAATTGACAGAAGAAGCTCACAGACCAGTGA
ACTGTAGGACAGTTTCTATGTGGATTCTGAAGAACAGCGCTGAATCTGAAAATATGAATT
GGATACTGGCTAATTCTAAGCCCTGTCCAAAATGCCAGCGACCGATAGAGAAGAACCAGG
GATGCATGCATATGACTTGCACACCTCCTTGCAAATTTGAGTTTTGCTGGTTATGTCTGG
GTTCATGGGTAGAACATGGTGAGAGGACTGGTGGCTTTTATGCCTGCAATCGCTATGAAT
CGGCAAAGAAAGAGGGAGTTTATGATGAGGCTGAAGCAAGGAGGGAAAGGGCTAAACACT
CACTCGAGAGATATATGCACTACTATGAACGCTGGGCATCTAATCAGACATCGAGGCAGA
AGGCACTAGCAGATCTGCAAAAGGCGGAAAAGGAGCAACTTGCAAAGTTAACTGAAATTT
ATGGAATACCGGAGACACAACTGAAGTTCATTATTGAAGCTTGGTCACAGATTATAGAAT
GCAGGCGAGTGCTCCAATGGACATATGCGTATGGCTACTATCTCGACGANCAGGTCAAGA
GTGAATCTTTTGAGTATCCTGCAGGTGAAGCTGAGTCTGGTTTGGAACGTCTCCATCAGT
GTGCTGAGAAAGACCTGCTAGGGTTTTTACCATTCTCAAAACATGATACTACCGAAGATC
ATCCTTCACCAGCTGAATTTGGTGAATTCCGTGTGAAGCTTGCTGGTCTGACAAGTATAA
CTCGGAATTACTTTGAGAACCTTGTCCGAGCATTGGAGGATGGGCTGGAGGATGTCCATT
GTGCTGCAACCTCAAGCAAGGCCACCAACTCGAAGAAAGCAGGAGGTAAAGGCAAAGCGG
CCTCCATATCATCGTCGGACCATTCTGATGATACTTGGCCATGTGAACGCTGCACATTTC
TGAATCCCTCTTCTGTGGATGCGTGTACTGCCTGTGATAAGCAGCGGTACTAGCTAGTAG
ATTAATAAACTGCTCAAAAGGCAGTGACACAAGAAGCTCAAAGCGCATGAAAACATGTGT
TTGCTTATGCTTTAGAAGGTCTCTCAACGGATGCAACGGTGTACATAAGAAGGGTCGAAG
GTCCATCCTTTGTTTTATGTAGATCCCAACAGATGTCATTGGTTACAAGGTGAATGTGCT
TTTGCCTGTGTGTGTTGTAAATATTAGTTACGAATATAGGTGTAATGTGGTGGGTTTCTT
TTGTGGTTCCATCCACCTTGCTCCCTTCGTTTCTCCTAACCTAAAACGTATTAGGTTAAA
GACCTGCCAAGAATTATTTTTATTAATATATGGTTTCCTTTGGTGCGGAAAAAAAAAAAA
AAAAA

Homology of Contig U35_4061 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g42740.7	401	0.0	protein\|IBR domain containing protein, putative, expressed
Brachypodium v1_2	Bradi3g41760.1	599	2e-180
Arabidopsis v10	AT1G65430.1	567	1e-146	\| Symbols: ARI8, ATARI8 \| IBR domain-containing protein \| chr1:24301165-24306159 REVERSE LENGTH=567