barSeed - Barley Seed Development Database

Probe CUST_4761_PI390587928

Source Contig U35_4063

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4761_PI390587928	Hv_44K_v2	CAATGACAAATGTTTTCGAAGAACAAAACGGTCGCCTTTTTCGGCTGATTCTGCAAAAAA	1412	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.024	1.566	1.302	1.079	0.423	0.412
Raw	927.751	2211.039	1602.670	2057.007	286.004	299.246

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_18065.1	2061	9e-22	1421 - 1475	100	55 / 55	plus	ABC09637 ABC13054 ABC44553
JLOC1	JLOC1_12490.1	1829	5e-22	1393 - 1447	100	55 / 55	plus
Harvest35	U35_4063	1483	3e-25	1413 - 1472	100	60 / 60	plus

Contig Sequence (1483 bp)

>U35_4063 1483 Hv_44K_v2
GGGCTGCAGGGCCTCGCCTAGGGTTTCGCCCCATCGATCCCCGGCGCCCCTCCTCCACCC
GCGCAGCCTCTCCAGCCGCGCCGCCTCTCGACCGCATTCTCCCCCTCGCGGCCGCCACCG
CGAGGGAGAGCGAGCGCGAGCGCGGGGATCGGCCGCTCCCTCCCCGCCGGCTCGAACTCG
ATCCCTCCCCTCCCCGGACCGCCGGCCGGGGGCGGAGGCCTGGGCGAGCAGGGAGGGGGG
CAGCGTCGGGAGCAGGATGATCACGCTGTTTGCACAGGGCTAAATCTTTGTGACCACTAG
AGTGCTATTTCGGAACAAGATAACTTCTAAGTGAAGCTGCACGCAGAGAACCTTTAGAGT
TGTCTGCTGTTATTGCTTCCATGGCAACAAATGAGAACCTTCCACCAAATGTCATCAGGC
AATTGGCTAAAGAACTGAAGAATCTTGATGAATCACCTCCGGAAGGGATTAAAGTTATTG
TTAATGATGATGACTTCAGCACCATTTTTGCTGATATTGAGGGCCCTGCTGGTACTCCCT
ATGAGAATGGAGTATTCCGGATGAAGCTATTGTTGTCCCGTGACTTCCCTCACTCTCCCC
CAAAAGGATACTTCTCGACAAAAATATTCCATCCAAACATAGCAACTAGTGGTGAGATAT
GTGTGAACACATTGAAAAAGGATTGGAACCCTAGTCTTGGATTGAGACATGTTCTGCTGG
TAGTAAGATGCCTTCTGATCGAACCATTCCCTGAATCTGCCCTTAATGAACAAGCTGGAA
AGATGCTGCTTGAAAACTACGAGGAGTATGCACGCCTTGCAAGGCTGTACACCGGCATTC
ATGCACATAAGCAAAAGAATAAGTCCAAGACCGGAGCCATTTGCGAGTCAACAACAGCTC
TAAACACGGGTCAGAGCAATAGCACTGTTCCGAGCAAGAACATACCATCAGCGGCGCCAG
CACAAGTATCCACCTCCACCTCAACCAAAGTTCTCGGCATACAGGATCAGAACGCAGCTC
CTTCTGACCCTTCTGTAGGCTCATCAGCGGAACACAAGAAGGACGGGCCGCCTGCTGCCA
AAATCCCAGCCGAGAAGAAGAAGATGGATGCCAGGAAGAAGAGCCTGAAGAGGCTGTGAC
AGCGCGCCCCTGCCCGGATAGCGTCGAAGCGGGGCTGTTGTACTAGTTAGAAGATTCAAT
CCCCTTGATAAGCGCCAGATTCAGCCGATGCACAAGGGAACCGAACGAATAAATACATAA
ACCCCAAGGGCGACATCTGATGAGTCTGGTGGCTGATTGGCAGAAGCATGCATGCCTGTA
CACAGGCAGGCATGCATGCATTAGTGTTTAGTGAGATGTGCATGTGAGTTGGTCTCCTGC
TGTTTGTTGGAATAAACTGTGCTACTGATGTGCAATGACAAATGTTTTCGAAGAACAAAA
CGGTCGCCTTTTTCGGCTGATTCTGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_4063 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g45000.2	253	1e-121	protein\|ubiquitin-conjugating enzyme, putative, expressed
Brachypodium v1_2	Bradi1g31580.1	253	9e-130
Arabidopsis v10	AT5G05080.1	251	7e-98	\| Symbols: UBC22, ATUBC22 \| ubiquitin-conjugating enzyme 22 \| chr5:1498727-1499972 REVERSE LENGTH=251