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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_4750_PI390587928Hv_44K_v2TAGGTTATGTATAGTCATTGCTAATGCTCATGGAAACCCAGATGCGTTCTGGGGTGTAAA831GeneList: yellow
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 2.0891.8701.1880.7950.4060.392
Raw 1072.5361539.439833.723862.740156.607163.641



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
JLOC1JLOC1_4945.314526e-211250 - 13079758 / 60plus
JLOC1JLOC1_4945.220226e-211820 - 18779758 / 60plus
JLOC1JLOC1_4945.120536e-211851 - 19089758 / 60plus
Harvest21ABC097949053e-25832 - 89110060 / 60plusABC09794
Harvest35U35_40749053e-25832 - 89110060 / 60plus



Contig Sequence (905 bp)

>U35_4074 905 Hv_44K_v2
GGGTCATCGGTCTGCTGCTGCAGGAAGTTATTATGATAGCACGGGATATGGTTATGGTAG
AGGAGGCTATGGTGCCGCCGCTGCTGCCGCTGCCTATGGAGGCAATGCTGGATATGGGTC
TGGTTTTGGTGGTGGCTATGGAGGCTCTATGTACGGTGGTGCTTATGGTGCATACGGACC
ATATGGTGGTGGTGCCTATGGTGCGGGTGCTTATGGAGGCGGTGCCTATGGTGGGGGTGC
TTATGGAGGTGGTGCCTATGGCGGCGGCGCTCCTGGTGGCTACGGTGCTGGTGGATATGG
TAGTTATGGGGGAGCAGGAGCAGGGGCAGGAGCAGGGGGTGCTGGTGGTGGTGGTGGTGG
AAGTGCAGGTGGTCGGGGCTCTAGCAGGTACCATCCCTATGGGAAATGAGTGCAAACCCG
TGTGGTTTTTTCTAGGATGCAATAAGCGCACTCATCTCCATGGGATCTCCTAGAAGTTGG
GCATTCATCTTGGGTTACCTAAACAGAGGCATCAGAACATTTTTGGTTTTGTTGAATTAA
AGTCGTAACCAGAGACAAGTGTAATCTTTGTTGCTGAGCCTGCCCGTAGTTTGGTGTAGC
GGCTACACATTAAACTGTGTTGTATTCCTTAGTTTCCATACGCAGAGCGTTAGAAAACCC
TGAAAACCAAGCCTTTCGTGGTAGGAACAATATTGGTGTGATAGAACTATATTTGTGCTG
TAAGAGATTGTCTTTGCAAGCTAGCTGTTGCCATCTGAGATTATATGTAGGGGAGCCTTT
AAACTGTTTGGTTTATGCATCTGGCGGACTGTTTGATGCATTTTGACATCGTAGGTTATG
TATAGTCATTGCTAATGCTCATGGAAACCCAGATGCGTTCTGGGGTGTAAAAAAAAAAAA
AAAAA



Homology of Contig U35_4074 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None