barSeed - Barley Seed Development Database

Probe CUST_4749_PI390587928

Source Contig U35_4075

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4749_PI390587928	Hv_44K_v2	ATCTGTGGGTCTCTGTTTCTCTCGTATAGTTGTGGTGAGAAAGTATGATCTATATAAAGG	1197	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.974	0.813	0.720	0.588	1.504	1.271
Raw	3.413	3.127	2.782	4.218	4.318	4.222

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65284.1	1427	3e-21	1346 - 1405	97	58 / 60	plus	ABC10529 ABC16614 ABC46214
JLOC1	JLOC1_42950.3	1330	2e-21	1247 - 1306	97	58 / 60	plus
JLOC1	JLOC1_42950.2	1121	2e-21	1038 - 1097	97	58 / 60	plus
Harvest35	U35_4075	1293	3e-25	1198 - 1257	100	60 / 60	plus

Contig Sequence (1293 bp)

>U35_4075 1293 Hv_44K_v2
TCGAGCACTGTTGGCCTGGGTACTAGTACTATCCTGCATTCCTCCTCCCCCTCGTCCACA
GCTAGCTCTTGTCTCCGCAGCCAGGCAGAGACTCCTCCGCGCTCCACAAGTGCTCACCGT
ACCAGTAAGAAGGAGAGGAGCGGCCGGGGAGGAGAGGAGATCCATGGCGAGCAGCGTGGG
GGGAGATGCCGGGGAAGGGGAGTGGCTCAAGGTCACCGAGCTGAGGGCCATGGCGGAAGC
TCAGGACCCGCATGTCAAGGAGGTGGACAACCTGACGCTCCGGAGGTTCCTGCGGGCTCG
CGGCCATGTCGTCGGCAAGGCCTCGGCGATGCTCCTCAAGTTCATGGCGTGGAGGCGGGA
GGCCGTGCCGGGCGGCGTCATGCCGCCGGAGCTTGTGCGGACGGAGCTGTCGCGCGAGAT
GGCCTCCCTGGGCGGCGTCGACCGCTCCGGCCGCCCCGTCCTGCTCGCCTTCCCGGCCAA
GCACTTCTCCGCCAACCGGGACATGGCCGGCTTCAAACGTTATATTGTCTACTTGCTCGA
CAGCATCTGCGCCAAGATCCCCAGAGGCCGGCAGGAGAAGTTTCTGTGCATCGTGGACCT
CAAGGGGTGGGGGTACGCCAACTGCGACGTGCGCGCCTACATCGCGGCCATCGAGATCAT
GCAGAGCTACTACCCGGAGCGGCTGGGCAAGGCGCTCATGATCCACGTGCCTTACCTGTT
CATGAAGGCGTGGAAGATGGTGCAGCCCTTCATCGACGCCAACACCAAGGACAAGTTCGT
GTTTGTGGACGACAAGAGCTTGGAGGAGACGCTGCGGCGGGAGATGGACGACGGCCAGCT
CCCGGAGATGTACGGCGGGAAGTTGGCCATTGTTCCCCTCGAGTAGATCGAGTGAGGAGG
AGCACGGAAGAGGAATCGATGTACCTGAAACAAATTAACCACGTGCCATGTGGATGTAAC
CAGGGGATGGCTCTACTCCACGCGATGTCCATGTAATGTAACCAGGGGAGTGAGACGAGC
GCAGCTTGCTCTCACTCTCTTGCAGCGTTGTGAGTTGTGACTGCTTCGTACGTGTGGCCA
GCCCAGCCGGTGCTAACGTCGATGGATCAGTAATACGGAAGGACTCTAGGGTACTTAGTG
GTAGGTGTATCGGAGTATGTCTCTTACGTGAACATATCAGCTTTTGTTGTATCACATATC
TGTGGGTCTCTGTTTCTCTCGTATAGTTGTGGTGAGAAAGTATGATCTATATAAAGGAAA
TAAAATAAATTAAGTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_4075 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g70210.1	248	4e-126	protein\|CRAL/TRIO domain containing protein, expressed
Brachypodium v1_2	Bradi2g59420.1	248	1e-136
Arabidopsis v10	AT1G01630.1	255	1e-76	Sec14p-like phosphatidylinositol transfer family protein \| chr1:229206-230675 FORWARD LENGTH=255