barSeed - Barley Seed Development Database

Probe CUST_4748_PI390587928

Source Contig U35_4076

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4748_PI390587928	Hv_44K_v2	CAGTCATATGATTGTGATGTCCGTTCAGAATATGTATATATACCATATATGAAGTTCCCG	765	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70187.2	976	2e-24	884 - 943	100	60 / 60	plus	ABC09123 ABC41275
JLOC1	JLOC1_46568.1	863	8e-25	783 - 842	100	60 / 60	plus
Harvest21	ABC09123	846	3e-25	766 - 825	100	60 / 60	plus	ABC09123
Harvest35	U35_4076	846	3e-25	766 - 825	100	60 / 60	plus

Contig Sequence (846 bp)

>U35_4076 846 Hv_44K_v2
TCCAAACGGCCAACCGACGGCCACTCACTTCAGCTAGCTCAGGCCAGCAGCACAAAAACC
AACAAGCGAGCGCGAGCGCAGGCCAGGCCACCGCACCGCATCCATCTCATGGCGCTCTTC
TCCATCCTACGCTCGTCTCCGCCGGCCGTCCCGGCGGCCTCTTCTCGCCGACCACCCAAC
CACGGTGCCCACCTGCTACGCGTCAGCATCAGGGCCGCCGCGCCGTCTCTGTCCGTGAGG
TGCGAGCAGAGCAGCAAGCCGGGAGGCGGCAGCGTCGTCGACGTGTGGGCGAGCCGCCTG
GCCATGATGAGCTTCGCCGCGGCGGTCGTCGCCGAGGTGTCCACCGGCAAGGGCCTCGTC
GAGAACTTCGGCGTGGCAACGCCGGCGCCGGTGCTGGCGCTGGTGGTGTCGGCGCTCGTC
ATCGGGCTGGCCGTCCTCTTCATCGTACGGTCCGGAGCGCAAGATTGATGGATCCATCGC
GCGAAGTAATTGAAGACCTTTTTTTTTCTAGAATATATACAAAGTAACCGAAGACCTACT
TCTGAAGAACGAGTGTGCAGATCTTCTTTGCATCTGATTTGCAAAGGTTCCTGGAGATTC
TAATTAGCATTACTTTCGACTGTAAATCATTCGATGTATGCATATGCATATAGCAAATTT
CGGTTCAAATTCAAGTCAGCCAAAGGCTTCCGATGTTGCTAACACTTTTGTGTGTGAATT
CAGACTGGTGCTCAAAAGTCAGGTTGTAACACCCTGTTAATTATTCAGTCATATGATTGT
GATGTCCGTTCAGAATATGTATATATACCATATATGAAGTTCCCGAAATAAAAAAAAAAA
AAAAAA

Homology of Contig U35_4076 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None