barSeed - Barley Seed Development Database

Probe CUST_4742_PI390587928

Source Contig U35_4082

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4742_PI390587928	Hv_44K_v2	CTCGCTCTTCCTCCCCTACGACCTCGTCCAGGACGCGCGCGGCGCCGCCGCGGTGCGCGC	464	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357530	3342	2e-24	419 - 478	100	60 / 60	plus	ABC05096
MLOC	MLOC_27284.1	1171	2e-24	583 - 642	100	60 / 60	plus	ABC05096
JLOC1	JLOC1_18436.1	1473	8e-25	583 - 642	100	60 / 60	plus
Harvest35	U35_4082	524	3e-25	465 - 524	100	60 / 60	plus

Contig Sequence (524 bp)

>U35_4082 524 Hv_44K_v2
GATCGGAAATATAGCTCGCACGCCCTCCCCGTCGAGATCGTTCTCCCGTGCTCCCGCCCC
GTCCACACTCGCGAGCTCCAGATCCCCGAACCCTGACCCCCCCGCATGCCATCCCACTAG
CCCGCTCGCTCGCTCCCCCGCATGGCGCCGCGTCTCCTGCTCCTCGCCCTCGTCGCGGCG
GCCGTGGCCGTGCCGCCGGCGAGCGCCGCGGTGGCGAGCATCGACCTGGGCTCCGAGTGG
CTCAAGGTCGCGGCCGTGCACCTCGCGCCGGGCCGCGCCCCGATCGCCGTCGCCATCAAC
GAGATGTCCAAGCGCAAGTCCCCCGCGCTCGCCGCGCTGGCCGACGGCAACCGCCTCGCC
GGCGAGGAGGCGGCCGGCATCACCGCGCGCCACCCGGCCAAGGTCTTCTCCCGCATGCGC
GACCTCCTCGCCAAGCCCTTCCCCTACGCGCGGGCCCTCGCCGACTCGCTCTTCCTCCCC
TACGACCTCGTCCAGGACGCGCGCGGCGCCGCCGCGGTGCGCGC

Homology of Contig U35_4082 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g48110.1	903	2e-52	protein\|DnaK family protein, putative, expressed
Brachypodium v1_2	Bradi3g53100.4	728	4e-54
Arabidopsis v10	None