barSeed - Barley Seed Development Database

Probe CUST_4740_PI390587928

Source Contig U35_4084

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4740_PI390587928	Hv_44K_v2	ATAAATTGGTAAGAGATACCACACAAGCAGGTCAGTGGAATACTTCTTCCCAGCAAAAAA	842	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62969.1	3750	3e-22	881 - 936	100	56 / 56	plus	ABC00332 ABC00945 ABC00953
JLOC1	JLOC1_41234.1	3803	1e-22	2869 - 2924	100	56 / 56	minus
JLOC1	JLOC1_41233.1	1270	1e-22	744 - 799	100	56 / 56	plus
Harvest35	U35_4084	913	3e-25	843 - 902	100	60 / 60	plus

Contig Sequence (913 bp)

>U35_4084 913 Hv_44K_v2
ACACCAGTCATCTTCTATCTGCCGCCCGCGCTATCCAGTCCCACGGCGCACATGGCAAGC
ACCTACCTCTCAAGCTTCCAGGCCGCCGCCGCCGCCACTAGCGGCGGCGCTTCAACGAGG
CCGAGACCAAGGCCAAGGCCAAGAGTGGTGACATGCCACACCTTCGAGCCATCGGGCAGG
CGATCAGCCTGCCTCAGTCTAGGCCTCGGCCTTGCCACCGCCGCTGTGTTCCACACGACA
CCCGCCCGCGCCACCGCTGACGGCGACGAGGAGCCGGAGCCGGCCAATAACGGCTGGTGG
CTCACCGAGTTCCCCCTGCCGGTGCCCAAGATCCGCAACAAGGAGATCAACAATGGCGAG
ACAGGGACGCGATCCTTCGTGAAGAACGGCATCTACATGGCGGACATCGGGCCGAGCTTC
GCGGCGCACGCCTACCGGGTGCGCAGCTCTGCCTTCGACCTGCTGGCGCTGGAGGACCTG
CTCGGCAAAGAGGCCTCCAACTATGTCAACAAGTACCTCCGCCTCAAGGCCACCTTCATA
TACTACGACTTCGACAAGCTCATCACCGCCGCAGACCCCGACGCCAAGCCACCGCTTCTT
GACCTCGCCAACCGGCTCTTCGACAGCTTCGAGAAGTTGCAGGCCGCCGTCACCACCAAG
GATGACACCGACATAGGATCCTGCTATGCTGACACAAAGCTCATACTGCAGGAGGTCATG
ACAAGAATGGCATAGCCAGGACCCAGGAGAAACAGTTCTTTCACGAACTGAAACTCCATC
CAGGATAGCCTCAGTTATACCATTGTGCGTGATGTAATGTACATGTACATTTGGTGATAC
TGATAAATTGGTAAGAGATACCACACAAGCAGGTCAGTGGAATACTTCTTCCCAGCAAAA
AAAAAAAAAAAAA

Homology of Contig U35_4084 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g01480.2	223	6e-92	protein\|oxygen evolving enhancer protein 3 domain containing protein, expressed
Brachypodium v1_2	Bradi1g59500.1	234	3e-115
Arabidopsis v10	AT3G01440.1	220	3e-52	\| Symbols: PQL1, PQL2 \| PsbQ-like 1 \| chr3:168478-169407 FORWARD LENGTH=220