barSeed - Barley Seed Development Database

Probe CUST_4734_PI390587928

Source Contig U35_4090

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4734_PI390587928	Hv_44K_v2	ACAGAGCAGATCTGTGGATCTTGTCATCTGTTGCTACTTCTTGGATTGTGGATGGATACG	1748	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.451	1.335	1.157	0.923	0.357	0.336
Raw	1245.433	1793.756	1355.300	1701.126	230.547	239.834

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376994	2248	6e-24	2037 - 2095	100	59 / 59	plus	ABC10424 ABC32216
MLOC	MLOC_55523.1	2821	6e-24	66 - 124	100	59 / 59	minus	ABC10424 ABC32216
JLOC1	JLOC1_35826.2	3474	3e-24	1781 - 1839	100	59 / 59	minus
JLOC1	JLOC1_35826.1	4045	3e-24	2352 - 2410	100	59 / 59	minus
JLOC1	JLOC1_35827.1	6392	3e-24	1777 - 1835	100	59 / 59	plus
Harvest21	ABC32216	262	6e-22	177 - 236	97	58 / 60	plus	ABC32216
Harvest35	U35_4090	1834	3e-25	1749 - 1808	100	60 / 60	plus

Contig Sequence (1834 bp)

>U35_4090 1834 Hv_44K_v2
CAGGGTCGGGGTACCGGCCGCGGCCGGCATCGCGCTAGTCGCCATCGTCGTCTCCTCCCG
CAGGGGCGGGATCAAATCCCCATGGCGGCGCCGGAGGAAGACCGCGCTTGGGCCCAAGGA
ATGGCGCGGCTTGTTCACGCCGGAGGGGAAGTTTTACGACGGCGGTGTCAAGCTACTGAA
GAGAGTTCGGAACGGAGGGGTTGAGCCGAGCATCAGAGCAGAGGTCTGGCCCTTCATTTT
GGGAGTTTATAGCCTGAATAGTTCAGCAGCTGAGAGGGAAGCAGTTAAGGTCCATAACAG
GAAGGGATATCTGCTCTTAAGGAAACATTGCTTGCGAAAAAACAATGAAGAAAGCAAGCG
ATCAGTCAATCACAAACAGAGCATTAGTTCTGGCAAAGTCCAAGAATCTGTTACTTCTGT
TGGATCTGAAGAACAACCTGAAAAAGTAAGCGTGGAAGATCATATCACGACCGAGGAAGA
GAATTCTTGTGTTAGTTCAGAGCAAGAAATGCAGGATAAGACAACTAAAGCAATTCTAGA
GAACCAGGCGGATGAAAACCTCTTTTCATCTAATTCACGTGATGACAATGAGAGTGAGAA
AAGTGATGTGACCCATGTGGAATCCCATGATGGTGTGGCCTCAGTGCACCAGTTTTCAGT
TGAGGATGAAGAAGAAAGTATGCCCCTGCCCAAATATTTGAACACAGGAGGAAGTATAGA
AGCTGAAACTAAGTTATCTAAGGATGCCCGTCCTGTGAAGTCTGCACGGACAGTTGAGGA
TTTTGAGACATGGCAAAGGATAATTCGTTTGGATGCAGTTCGTGCTAACAATGAATGGGT
TTCCTACTCTCCATCCCAAGCCGCTGTTACCAGGGAGAAGGCAATTGAATCTGCTTCAGC
TGTTTGTCTCAAAGACTATGAGCACTTGGAAGCACATAGGATCCATCATGCGTCGCGTCT
TGTTGCAATACTTGAGGCCTACGCAACGTATGACCCAGAAATTGGCTATTGCCAGGGCAT
GAGCGACCTCCTTGCACCTCTCCTTGCTGTGCTGGAGGAAGACGATGAAGCCTTCTGGTG
CTTTGCCGGTTTCATGAGGAAAGCCCGCCACAACTTCAGACTCGACGAAGTGGGTATCCG
CAGGCAACTCAACATGGTCTCCAAGATAATAAAAACCAAGGACTTCCATCTTTACAGGCA
CCTGGAGATGCTCGAAGCCGCAGACTGCTTTTTCGTTTATAGAATGGTGGTTGTGATGTT
CCGGAGGGAACTCACCTTCGAGCAGACCCTCAGCCTGTGGGAGGTGATGTGGGCCGATCA
GGCAGCGAGGCGTGCTGGGATCACAAGATCGTCCTGGGGAAAACTTCGGCTTGGAGCCCC
TCCGACAGATGACCTGCTGCTGTATGCAATTGCAGCCAGTGTACTGGAGAAGAGGAAACT
GATAATAGAGAGCTATAGCAGCATGGATGAGATCATTAGGGACTGTAACAGCATGGCCGG
GCAGCTGGACATTTGGAAGCTCCTGGACGACGCCCATGATTTAGTGGTGACCGTACAAGA
CAGGATCGAGTAGCTGGGATCTACCCATGCTTATATCTGTATGATTGGTCCTGGTAGCTT
TCACGTTATCACATGTCTGTTATATACAATATCTTGTATGAGGTTATCGATAGAAACATT
TTTTGTCTTGTTTTCTGGCGTGCCCTCTCTCTGCGTGTGGAACCCGTCACAGTATGTCTG
TTCTTTGCACAGAGCAGATCTGTGGATCTTGTCATCTGTTGCTACTTCTTGGATTGTGGA
TGGATACGGGGGGGTCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_4090 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g37410.1	587	0.0	protein\|TBC domain containing protein, expressed
Brachypodium v1_2	Bradi3g30880.1	557	0.0
Arabidopsis v10	AT5G41940.1	549	3e-171	Ypt/Rab-GAP domain of gyp1p superfamily protein \| chr5:16782039-16785451 FORWARD LENGTH=549