barSeed - Barley Seed Development Database

Probe CUST_4730_PI390587928

Source Contig U35_4094

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4730_PI390587928	Hv_44K_v2	GTAGCTACCGTAGTACAGTGTGACCTGTATAAGAAGAAAAGATTTTGAGTTTTTGAGTTA	1920	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4967.1	2289	2e-24	1033 - 1092	100	60 / 60	plus	ABC16240 ABC22260
MLOC	AK362840	3347	9e-22	3293 - 3347	100	55 / 55	plus	ABC16240
JLOC1	JLOC1_3164.1	1197	8e-25	993 - 1052	100	60 / 60	plus
Harvest21	ABC16240	638	3e-25	17 - 76	100	60 / 60	minus	ABC16240
Harvest35	U35_4094	1996	3e-25	1921 - 1980	100	60 / 60	plus

Contig Sequence (1996 bp)

>U35_4094 1996 Hv_44K_v2
GTTAGTTCCCCTAAAAACTGACTATCTCGAACCCGGCCCACCGTACGGTCTTGCTTAGTC
TCCGCCCCGTCCCCGGTTTGGTCCGTTCCTATCATCACCGAGCCTCGCAGCCGTCGAGCT
CCGCCGCCGTAAACGATGGCCGACGGCAACGCCCCCGGCTCGCCGGCTTCTTCGCTACAG
AGCCACCGCTACGCCATCAAGTCCTCAGTGCACAATACGGCAGCTAGCCGGAGGCGTGAA
CAGGCTATAGCAATAGGGAAGGAAAGAAGGGAAGCCTTAATGCGTGCAAAGCGTGTGTGC
CGTGCCCCACTTTCTGGCAACGATGAGGCTACAATTGAAGATGGAGATATGGTTATTGAT
GAGAAAGCAGATATTGAAACAAGAACTGCTCAAGCTGTTGAAGAATTGAAATCAGCTTTG
TCAAGCCAGGGAAAAGGAGCCCAGAAGAAGAAGATAGAGGCACTTCGTGCAGTGAGACGT
GTGTTGTCACAGTCTGTAGTACCTCCCATTCAAGTAGCAATCAAAGCTGGGGCAGTTCCT
CTTCTAGTGCAATATCTGTCCTTTGGATCTTCAGATGAACAGTTGCTAGAGGCTGCTTGG
TGCCTTACAAACATAGCAGCTGGGGAGCCAGAAGAAACAAAATCCGTGCTGCCCGCATTA
CCATTGCTTGTTGCTCACCTTGGTGAGAAGAGCTCCACACTTGTTGCTGAGCAATGTGCA
TGGGCCATCGGTAATGTTGCTGGTGAAGGAGCAGACCTGAGAAGCACTTTAATCGCACAG
GGTGCTTTGTGGCCTCTTGCCCGCCTAATGCTATCAAGCAAGGGTTCTACAGCAAGAACT
GCTGCTTGGGCATTGTCAAATCTCATCAAGGGGCCTGATCCGAAGGCTGCGTATGAGCTT
ATTAACATCGATGGTGTGCTAAATGCAATCATAAGGAACTTGGAAAAGGCGGACGAAGAG
TTAGCAACTGAGGTGGCATGGGTGGTGGTATATCTTTCAGCACTTTCAGAAAAAGCTATC
AGCTTAATAGTACGAAGCCATGTGCCTCAGTTGCTGATTGGACGCCTGCTGGCATCTGAG
AACTTGCAGTTGCTCATTCCGGTGCTTCGTGGTTTAGGGAATCTTGTAGCCGGGGATGAA
TACATGGTTAATTCAATCCTAATTGTTGGAAACAGCATCACAGATCAAGCTTTATCAAGT
CTTATAAAATGTTTGAAGAGTGACAATAGGGTTCTCAGAAAGGAGGCTTCATGGGCATTG
TCAAATATAGCAGCAGGCAGCTTTGAGCACAAGAAATTGATTTTCACCAGTGAGGCGACA
CCTTCGCTAATACACCTCCTGACGAGTGCACAGTTTGACATTCGCAAGGAAGCAGCTTAC
ACCCTGGGCAATCTGTGTGTTGTTCCAGCAGGAAGTACTGAGCCCCCGAACATAATCACC
GAACATCTAGTCTCGATCATAAATGGTGGAGCCCTCCCAGGATTCATAAATTTGGTCAGG
TCTGCTGATATAGAGAGCGCAAGACTCGGTCTTCAGTTCCTGGAACTGGTGATGAGGGGG
TATCCCAATGGACAGGGTCCACAGCTTGTGGAGAGGGGGGACGGCATCGAGGCCATGGAG
AGGTTCCAGTTCCATGAGAACGAGGCGATGAGGAACATGGCCAATGGGCTGGTCGACAAA
TACTTCGGTGAGGATTACGGCCTCGAGTGAGCGGTGACTACCGCCGCCTCGCCAATCTTG
CATCTGTTTGTGAACCCAGCAGCAGCTGCTCGTGTACTCAAACTGTAAAATGCAACTTTT
TTGTAATCGTGGAATGTATACAAGACTGTCTGAGGTAGCGTAGTTGCTGTGTAACTTGGC
CATCGCCATGGACGTGTGTGGCGATGCGGTTGTTGTAGCTGGAAGCTTGAAGTGAGCTGG
GTAGCTACCGTAGTACAGTGTGACCTGTATAAGAAGAAAAGATTTTGAGTTTTTGAGTTA
AAAAAAAAAAAAAAAA

Homology of Contig U35_4094 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g06470.1	505	protein\|expressed protein
Brachypodium v1_2	Bradi2g00320.1	528
Arabidopsis v10	AT5G03070.1	519	\| Symbols: IMPA-9 \| importin alpha isoform 9 \| chr5:718468-721395 REVERSE LENGTH=519