barSeed - Barley Seed Development Database

Probe CUST_4729_PI390587928

Source Contig U35_4095

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4729_PI390587928	Hv_44K_v2	CTAGCAAAAAATGCAGTTCTCACATCTTTTGCATCTGGACGTGCTACGTCTCTGGTGGTT	522	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251516.1	1828	2e-24	597 - 656	100	60 / 60	plus	ABC18266
MLOC	MLOC_58685.4	1273	2e-24	921 - 980	100	60 / 60	plus	None
MLOC	MLOC_58685.3	1028	2e-24	666 - 725	100	60 / 60	plus	None
MLOC	MLOC_58685.1	1060	2e-24	690 - 749	100	60 / 60	plus	None
JLOC1	JLOC1_38141.1	1202	8e-25	695 - 754	100	60 / 60	plus
Harvest21	ABC11566	630	3e-25	523 - 582	100	60 / 60	plus
Harvest35	U35_4095	630	3e-25	523 - 582	100	60 / 60	plus

Contig Sequence (630 bp)

>U35_4095 630 Hv_44K_v2
GCGCTCCTGCTCGCCGAGCCCTCCCTCTCCGGATCTCCAGCCATGTACGGCGGCGACGAG
GTCTCGGCGATCGTCATCGACGTGGGCTCCTACAGCTGCAAGGCGGGCTACGCTGGCGAC
GACACCCCCAAATGCGTCTTCCCCTCGGTTGTTGGTTCAATTGAACAAACGGGAGATGCT
GATGAAGCTAAACCAGAAAAGGAGGCCGACTCTGGATCAGATCCTAAGAATGGATCCAAG
CCTATGGATGTGGACAAAGCCAAGACAAAGCGCAAATTTTATCTAGGCCAAGAATTAGAA
TTCAGGAGGGATCATATGGAGGTGATCTCACCGATGAAAGATGGAACAGTTACTGATTGG
GAAGTTGTTGACAACATATGGAATCATGCTTTTAGACGGCGGCTATTGATCAATCCTGAA
GAGCATCCTATGCTGATAGCAGAACCTTCTACAAACAGTGGACAACAAAGAGAGAAAGCA
GCAGAAGTTATGTTTGAGAAGTACAAAGTGCCAGCGCTGTTCCTAGCAAAAAATGCAGTT
CTCACATCTTTTGCATCTGGACGTGCTACGTCTCTGGTGGTTGACTGTGGTGGCGGGTCT
ACTGTGGTTTCTGCTGTGCATGATGGTTAT

Homology of Contig U35_4095 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g04280.2	444	5e-125	protein\|actin, putative, expressed
Brachypodium v1_2	Bradi1g77930.2	337	2e-131
Arabidopsis v10	AT1G18450.1	441	1e-84	\| Symbols: ATARP4, ARP4 \| actin-related protein 4 \| chr1:6348199-6351766 FORWARD LENGTH=441