barSeed - Barley Seed Development Database

Probe CUST_4728_PI390587928

Source Contig U35_4096

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4728_PI390587928	Hv_44K_v2	AGTGCAACTCTAGAAAAAACTCAGCTGATGCTTGTACGTGCGTGCAGGAAGATGTGTGTT	1616	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372830	1787	2e-24	1519 - 1578	100	60 / 60	plus	ABC18266
MLOC	MLOC_71657.3	2519	2e-24	1327 - 1386	100	60 / 60	plus	ABC18266 ABC26000
MLOC	MLOC_71657.2	1715	2e-24	1411 - 1470	100	60 / 60	plus	ABC18266
Harvest21	ABC18266	621	3e-25	216 - 275	100	60 / 60	minus	ABC18266
Harvest35	U35_4096	1894	3e-25	1617 - 1676	100	60 / 60	plus

Contig Sequence (1894 bp)

>U35_4096 1894 Hv_44K_v2
AAACTCGCTCGTCGTTTTTTTCCTCCCCTCTGCCCCGGCCCCTTCCGAGCCCTCGCTCCG
TGCCGTACCTAAGCGTCGCCGCCGACGCCTCAGCCCCGCAGACCCGGCACGCCATCCGCA
TCCGGCCCTGCGCCCCGCGCCGCGCCGCTCCCCAGCTCGCCGACTCCTCCCTCTCCGGAT
CTCCAGCCATGTACGGCGGCGACGAGGTCTCGGCCATCGTCATCGACGTGGGCTCCTACA
GCTGCAAGGCCGGCTACGCGGGCGACGACACCCCCAAATCCGTCTTCCCCTCGGTTGTTG
GTTCAATTGAACAAGCGGAAGATACTGATGAAGCTAAGCCAGAGAAGGAGGCTGACTCTG
CATCAGATCCTAAGAATGGATCCAAGCCTATGGATGTGGACAAAGCCAAGACAAAGCGCA
AATTTTATGTAGGTCAAGAATTAGAGTTTAGGAGGGATCATATGGAGGTGATCTCACCGA
TGAAAGATGGAACAGTTACTGATTGGGATGTTGTTGACAACATATGGAATCATGCTTTTA
GACGGCGGCTATTGATCAATCCTGAAGAGCATCCTATGCTCATAGCGGAACCATCTATAA
ACAGTGCACAACAAAGAGAGAAGGCAGCAGAACTTATGTTTGAGAAGTACAAAGTGCCAG
CGCTATTCCTAGCAAAAAATGCGGTTCTCACATCTTTTGCATCTGGACGTGCTACATCTC
TAGTGGTTGACAGTGGTGGTGGGTCTACTGTGGTTTCTGCTGTGCATGATGGTTATGTTC
TGCAAAAGTCTGTGGCAACTTCTCCGATTGGTGGTGAATTTTTAACTGACTGTATGATGA
AAAGCTTGGAGAGCAAGGGCGTTGTTATCAGGCCCCGTTATTCATTCAAGAAGAAGGAAG
CGAGCCCTGGAGATTATAAGGTTGTAGACCTTGATTTTCCAAACACCACAGAGAGTTACA
GGTTGTACCACATGAGAGCTATTGCTAGCGACATCAAGGAGACGGTTTGTAGAGTTCCAG
ATACTCCCTTCGATGAAGTGGCATATGCAAATGTTCCAACAACTTCATATGAGCTTCCAG
ATGGGCAAACTATTGAAGTTGGTGCAGAGAGATTCAAGATTCCTGACATTTTGTTCAACC
CATACCTTTCACAGACTATTCCTGGGATCGATGGATTTGGAGATTCCACTTCGATTCGTG
GACTTCCACGAATGGTCCTTGACAGTGTAAATAGGTGTGATGTTGACATTCGCAAGGAGC
TACTCAGCAGCATCTTGCTTTCTGGTGGCTCATCATCAATTCTGCAGTTAAAGGACCGTC
TAGAAAAAGAAGTACTGGAGGAGTGCCCTCAAAATGCTCGTGTGAAGGTTTTGGCAAGTG
GAAACTCAATAGAGAGGCGATTCAGTGTCTGGATTGGAGGGAGCATCCTTGCATCCCTTG
GGTCGTTCCAGCAAATGTGGTTCTCCAAAGCAGAGTACGAAGAGCACGGCGTTTCCTATA
TCCAGAGGAAATGCCCATGAAATGGTGGAGCATGCATCCTGCCCAAGCTTTGTGTTGCCG
AAAGATGTGTCTGAGCAACAGTTAGATGCAGGTGACCGACTATCTTTAGGTCCGCTAGTG
CAACTCTAGAAAAAACTCAGCTGATGCTTGTACGTGCGTGCAGGAAGATGTGTGTTGGTC
GCCACCTTTGTTACCTGGGGATATTTATATTGCTCTCATGACTGAGTTATCTTTAGGTCC
GCGAGGGCAACTTGATAACAAGCTCAGCTGATACTTGTCATTGATGGTAGATACATGTGA
TGATTTTTCTCGTCTGTGATGTAGAATGTGTAACAGTTTACCCTCCAGACTTCAGCCAAT
GTATCCGGAAATGAATTCTTTAGCCATTTACGTA

Homology of Contig U35_4096 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os08g04280.2	444	protein\|actin, putative, expressed
Brachypodium v1_2	Bradi1g77930.1	444
Arabidopsis v10	AT1G18450.1	441	\| Symbols: ATARP4, ARP4 \| actin-related protein 4 \| chr1:6348199-6351766 FORWARD LENGTH=441